View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_low_36 (Length: 255)
Name: NF17873_low_36
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 5710823 - 5711062
Alignment:
| Q |
8 |
gtgctactaccacaggtaaggaaggaaactctgctggaaccttcagatttgatgtatttccaaaaccactcgtcacaaatggctgcattggattaccttg |
107 |
Q |
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| T |
5710823 |
gtgctactaccacaggtaaggaaggaaactctgctggaaccttcagatttgatgtatttccaaaaccactcatcacaaatggctgcgttggattaccttg |
5710922 |
T |
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| Q |
108 |
tgtctctagagagtgatatatttgttccaacatatgatggaaacatggctaaggttgttgaaggccatagaaggtattgttttattgctagatgtctctt |
207 |
Q |
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| T |
5710923 |
tgtctctagagagtgatatatttgttccaacatatgatggaaacatggctaaggttgttgaaggccatagaaggtattgttttattgctagatgtctctt |
5711022 |
T |
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| Q |
208 |
tctattttatctcctctgtaacctcatcctttgatgatgt |
247 |
Q |
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| T |
5711023 |
tctattttatctcctctgtaacctcatcctttgatgatgt |
5711062 |
T |
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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 45807507 - 45807599
Alignment:
| Q |
64 |
tttccaaaaccactcgtcacaaatggctgcattggattaccttgtgtctctagagagtgatatatttgttccaacatatgatggaaacatggc |
156 |
Q |
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| T |
45807507 |
tttccaaaatcattcatctcagatggcagcattggattatcttgtgtctttagagagtgatatttttgttcccacatatgatggaaatatggc |
45807599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 24494540 - 24494434
Alignment:
| Q |
65 |
ttccaaaaccactcgtcacaaatggctgcattggattaccttgtgtctctagagagtgatatatttgttccaacatatgatggaaacatggctaaggttg |
164 |
Q |
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|||||||| || || || |||||||| ||||||||||| ||||| || ||||||||||||| |||||||| |||||||||||||| ||||| || || | |
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| T |
24494540 |
ttccaaaatcattcctctcaaatggcagcattggattatcttgtctcattagagagtgatatctttgttcctacatatgatggaaatatggccaaagtag |
24494441 |
T |
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| Q |
165 |
ttgaagg |
171 |
Q |
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| T |
24494440 |
ttgaagg |
24494434 |
T |
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