View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17873_low_37 (Length: 238)

Name: NF17873_low_37
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17873_low_37
NF17873_low_37
[»] scaffold0667 (1 HSPs)
scaffold0667 (17-238)||(4531-4752)
[»] chr2 (34 HSPs)
chr2 (25-238)||(10347853-10348060)
chr2 (25-238)||(9065453-9065667)
chr2 (27-233)||(12012412-12012618)
chr2 (25-120)||(9328667-9328762)
chr2 (27-238)||(12005979-12006190)
chr2 (25-112)||(16269157-16269244)
chr2 (27-116)||(9292007-9292096)
chr2 (17-120)||(9364688-9364791)
chr2 (25-213)||(10353177-10353359)
chr2 (25-238)||(9060996-9061215)
chr2 (27-213)||(10371928-10372108)
chr2 (27-108)||(10335914-10335995)
chr2 (25-117)||(9316081-9316173)
chr2 (25-108)||(7115633-7115716)
chr2 (25-213)||(11987373-11987561)
chr2 (27-108)||(8573496-8573577)
chr2 (27-114)||(9284175-9284262)
chr2 (159-238)||(9321166-9321245)
chr2 (159-238)||(9328786-9328865)
chr2 (160-238)||(16269277-16269355)
chr2 (57-116)||(8576392-8576451)
chr2 (27-120)||(9321052-9321142)
chr2 (17-75)||(7611999-7612057)
chr2 (152-238)||(10336024-10336110)
chr2 (27-120)||(9274591-9274684)
chr2 (160-238)||(8573360-8573438)
chr2 (150-238)||(7115500-7115588)
chr2 (151-211)||(9316210-9316270)
chr2 (159-234)||(9274705-9274780)
chr2 (151-211)||(9292113-9292173)
chr2 (161-213)||(12018768-12018820)
chr2 (24-75)||(17566107-17566158)
chr2 (163-220)||(7612153-7612210)
chr2 (160-213)||(9284076-9284129)
[»] chr3 (1 HSPs)
chr3 (25-114)||(37462557-37462649)
[»] chr1 (4 HSPs)
chr1 (25-213)||(29453199-29453378)
chr1 (25-238)||(29467650-29467854)
chr1 (25-212)||(29443217-29443395)
chr1 (25-213)||(29423333-29423512)
[»] chr4 (1 HSPs)
chr4 (25-213)||(26574929-26575111)
[»] chr7 (3 HSPs)
chr7 (27-115)||(45243769-45243857)
chr7 (27-91)||(45230502-45230569)
chr7 (25-66)||(45238018-45238059)
[»] chr8 (2 HSPs)
chr8 (149-237)||(41966585-41966673)
chr8 (29-120)||(41966684-41966775)
[»] chr5 (1 HSPs)
chr5 (24-71)||(36224485-36224532)


Alignment Details
Target: scaffold0667 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 4531 - 4752
Alignment:
Q  17 atcttttaatccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4531 atcttttaatccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatt 4630  T
Q  117 tcaacgctgtcatttgaattaacctcttcttcacctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagag 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631 tcaacactgtcatttgaattaacctcttcttcacctatttcgtcaggaagaggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagag 4730  T
Q  217 aaggatgtaacccatcaagttt 238  Q
    ||||||||||||||||||||||    
T  4731 aaggatgtaacccatcaagttt 4752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 10347853 - 10348060
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaacgct 124  Q
    ||||||||| |||||| |||||||||||||||||||||  || |||||  ||||| ||||||||||| ||||||||| ||||||||| || |||||  ||    
T  10347853 atccatattctttcatgacccaaacatcaattttagtatctttataatcgacagtgatacaaagacaccctcccaaaacagcaacatgaacttcaaaact 10347952  T
Q  125 gtcatttgaattaacctcttcttcacctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatgt 224  Q
     |||     ||||||   ||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  10347953 ctcacc---attaac---ttcttcacctatttcatcaggaagaggaacctcattgaaaatttcaagtgtgaggttaaacgcgacaattaaagaaggatgt 10348046  T
Q  225 aacccatcaagttt 238  Q
    ||||||||||||||    
T  10348047 aacccatcaagttt 10348060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 9065667 - 9065453
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaacgct 124  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||||||||| | ||||||||||||| ||||||||| ||||||||   |||| ||  ||    
T  9065667 atccatattctttcatcacccaaccatcaatattagtagtttcataattcaaaatcatacaaagacaccctcccaaaacagcaacagtcatttgaaaact 9065568  T
Q  125 gtcatttgaattaacctcttcttcacctatttcgtcaggaagtggaacctc-attgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatg 223  Q
     |||||   ||||||||||||  | | ||||||  ||||||| |||||||| |||||||||||||||||| |||||||| || ||||||| |||||||||    
T  9065567 ctcattactattaacctcttcacctcttatttcagcaggaaggggaacctcaattgaaaatttcaagtgtgaggttaaatgcaacaattaaagaaggatg 9065468  T
Q  224 taacccatcaagttt 238  Q
    ||||| ||| |||||    
T  9065467 taaccgatctagttt 9065453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 233
Target Start/End: Complemental strand, 12012618 - 12012412
Alignment:
Q  27 ccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaacgctgt 126  Q
    ||||||| |||||||||| | |||||||| |||||||||| || ||||||| ||||||||||||| ||||||||| ||||||||  ||||||||  ||      
T  12012618 ccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaactac 12012519  T
Q  127 catttgaattaacctcttcttcacctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatgtaa 226  Q
     |||  || ||||||||||  | | |||||| ||||||| |||||||||||||||||  ||||||||||||||||| |||||||||| |   ||||||||    
T  12012518 tattacaaataacctcttcacctcatatttcatcaggaaatggaacctcattgaaaagctcaagtgttaggttaaacgcgacaattaaacggggatgtaa 12012419  T
Q  227 cccatca 233  Q
    |||||||    
T  12012418 cccatca 12012412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 9328667 - 9328762
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaa 120  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||| ||||||||| || |||||||||||||||    
T  9328667 atccatattgtttcatcacccaaacatcaatttcagtagtttcataattcaaagtcatgcaaagacaccctcccaaaacatcaacatcaatttcaa 9328762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 238
Target Start/End: Complemental strand, 12006190 - 12005979
Alignment:
Q  27 ccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaacgctgt 126  Q
    ||||||| |||||||||||| |||||||| |||||||||| |||||||||| ||| ||||||||| ||||||||| ||||||||| ||||||||  ||      
T  12006190 ccatattctttcatcacccatacatcaatcttagtagtttgataattcacaatcaaacaaagacaccctcccaaatcagcaacattaatttcaaaactcc 12006091  T
Q  127 catttgaattaacctcttcttcacctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatgtaa 226  Q
     |||  || ||||||||||  | | |||||| |||||||  |||||||| |||||||  ||||||||||||||||| |||| ||||| |    |||||||    
T  12006090 gattacaaataacctcttcacctcttatttcatcaggaaaaggaacctcgttgaaaacctcaagtgttaggttaaacgcgaaaattaaacgctgatgtaa 12005991  T
Q  227 cccatcaagttt 238  Q
    ||||||| ||||    
T  12005990 cccatcaggttt 12005979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 16269157 - 16269244
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatc 112  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  16269157 atccatactctttcatcacccaaacatcaattttagtagtttcataattcacagttatacaaagacatcctcccaaaacagcaacatc 16269244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 9292007 - 9292096
Alignment:
Q  27 ccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||| |||||||| |||||    
T  9292007 ccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacactctcctaaaacagcaacagcaatt 9292096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 9364688 - 9364791
Alignment:
Q  17 atcttttaatccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatt 116  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |||||| |||||| ||||||||| | |||||||| |||    
T  9364688 atcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcatactaagacaccctcccaaaaccgcaacatcgatt 9364787  T
Q  117 tcaa 120  Q
    ||||    
T  9364788 tcaa 9364791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 10353177 - 10353359
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaacgct 124  Q
    ||||||||| ||||||||||||||||||||||||||||  || ||||| |||| ||||||||||||| ||||| ||||||||||||  ||||| ||  ||    
T  10353177 atccatattctttcatcacccaaacatcaattttagtatctttataatccacaatcatacaaagacaccctcctaaagcagcaacacgaattttaaaact 10353276  T
Q  125 gtcatttgaattaacctcttcttcacctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaatta 213  Q
     | | |   |||||   |||||||  ||||||| |||||||| ||||||||||||||| | ||||||||||||||||| |||| |||||    
T  10353277 cttact---attaa---cttcttcctctatttcatcaggaagaggaacctcattgaaagtctcaagtgttaggttaaacgcgagaatta 10353359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 9061215 - 9060996
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaacgct 124  Q
    ||||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| || |||||| ||||||||  ||||| ||  ||    
T  9061215 atccatagtctttcatcacccaaacatcaattttagtagcttcataattcacagacatgcaaagacacccacccaaaacagcaacacgaattttaaaact 9061116  T
Q  125 gtcatttgaa------ttaacctcttcttcacctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaa 218  Q
      ||||   |      |||||||||||  |  ||| |||  | ||||| |||||||||||||||||||||||||| |||||||| ||||||||||   ||    
T  9061115 cccattactattactgttaacctcttcaccttctaattcaacgggaagaggaacctcattgaaaatttcaagtgtgaggttaaatgcgacaattaaccaa 9061016  T
Q  219 ggatgtaacccatcaagttt 238  Q
    |||| | |||||||||||||    
T  9061015 ggatatgacccatcaagttt 9060996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 10371928 - 10372108
Alignment:
Q  27 ccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaacgctgt 126  Q
    ||||||| |||||||||||||| |||||  |||||||||| ||||| |||||||||||||||||| ||||| ||| ||||||||  ||||||||  ||      
T  10371928 ccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagacaccctcctaaaacagcaacacgaatttcaaaact-- 10372025  T
Q  127 catttgaattaacctcttcttcacctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaatta 213  Q
     |||   |||||   |||||||||||| ||| ||||| || ||||||||||||||| | ||||||| ||||||||| |||| |||||    
T  10372026 -attactattaa---cttcttcacctagttcatcagggagaggaacctcattgaaagtctcaagtgataggttaaacgcgagaatta 10372108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 10335914 - 10335995
Alignment:
Q  27 ccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaa 108  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||||| ||||||    
T  10335914 ccatattctttcatcacccaaacatcaattttagtagtttgataattcacaggcaaacaaagacaccctcccaaaacagcaa 10335995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 9316081 - 9316173
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaattt 117  Q
    ||||||| | ||||||||||||||||||| |||||||||||| |||||||| | ||||||||||||| ||||||||| |||||||| ||||||    
T  9316081 atccatagtctttcatcacccaaacatcagttttagtagtttgataattcaaaatcatacaaagacaccctcccaaaacagcaacagcaattt 9316173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 7115716 - 7115633
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaa 108  Q
    ||||||||||||||||||||||||||||  |||||||||||  |||||||||| ||||||||||||| ||||||||| ||||||    
T  7115716 atccatattgtttcatcacccaaacatctgttttagtagttctataattcacaatcatacaaagacaccctcccaaaacagcaa 7115633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 11987561 - 11987373
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaacgct 124  Q
    ||||||||| |||||||||||||| |||||| ||||||   | || ||||||||||| ||||||||| ||||||||| ||||||||||||||||||  ||    
T  11987561 atccatattctttcatcacccaaatatcaatcttagta---tgatgattcacagtcaaacaaagacaccctcccaaaacagcaacatcaatttcaaaact 11987465  T
Q  125 gtcatttgaattaacctctt---cttcacctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaatta 213  Q
      || |   | |||||||||   || | |||||||| | |||||  ||||||||||||||||  || |||||||||||||| ||||||||||    
T  11987464 tgcactattagtaacctcttcacctcctcctatttcatgaggaaaaggaacctcattgaaaacctcgagtgttaggttaaatgcgacaatta 11987373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 8573577 - 8573496
Alignment:
Q  27 ccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaa 108  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| || |||||| ||||||    
T  8573577 ccatattctttcatcacccaaacatcaatttcagtggtttcataattcacagacatacaaagacacccacccaaaacagcaa 8573496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 9284262 - 9284175
Alignment:
Q  27 ccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaa 114  Q
    ||||||| ||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||| ||||| ||| ||||||| ||||    
T  9284262 ccatattctttcatcacccaaacgtcaattttagtagtttgataattcacaatcatactaagacaacctcctaaaacagcaacctcaa 9284175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 9321166 - 9321245
Alignment:
Q  159 tcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatgtaacccatcaagttt 238  Q
    |||||||| |||||| |||||||||||||||||||||||||||| || ||||||| |||||||||||| ||| |||||||    
T  9321166 tcaggaagaggaaccacattgaaaatttcaagtgttaggttaaatgcaacaattaaagaaggatgtaatccaccaagttt 9321245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 9328786 - 9328865
Alignment:
Q  159 tcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatgtaacccatcaagttt 238  Q
    |||||||| |||||| |||||||||||||||||||||||||||| || ||||||| |||||||||||| ||| |||||||    
T  9328786 tcaggaagaggaaccacattgaaaatttcaagtgttaggttaaacgcaacaattaaagaaggatgtaatccaccaagttt 9328865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 16269277 - 16269355
Alignment:
Q  160 caggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatgtaacccatcaagttt 238  Q
    ||||||| |||||||| |||||||| ||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||    
T  16269277 caggaagaggaacctcgttgaaaatctcaagtgttaggttaaacgcgacgattaaagaaggatgtaacccgtcaagttt 16269355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 8576451 - 8576392
Alignment:
Q  57 ttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatt 116  Q
    ||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||||||    
T  8576451 ttagtagtttcataattcacactcatacaaagacaccctccaaaaacagcaacatcaatt 8576392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 9321052 - 9321142
Alignment:
Q  27 ccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaa 120  Q
    ||||||| |||||||||||||||||||| ||| |||||||| ||||    |||||| |||||||| ||||||||| || |||||||||||||||    
T  9321052 ccatattctttcatcacccaaacatcaacttttgtagtttcgtaat---aagtcatgcaaagacaccctcccaaaacatcaacatcaatttcaa 9321142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 7611999 - 7612057
Alignment:
Q  17 atcttttaatccatattgtttcatcacccaaacatcaattttagtagtttcataattca 75  Q
    ||||||||||||||||| ||||||||||||||||||||  ||| |||||||||||||||    
T  7611999 atcttttaatccatattctttcatcacccaaacatcaaacttaatagtttcataattca 7612057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 10336024 - 10336110
Alignment:
Q  152 tatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatgtaacccatcaagttt 238  Q
    |||||| |||||||| ||||||||||||||||| ||||||| ||| ||||| ||  |||||| | |||| |||||||||||||||||    
T  10336024 tatttcatcaggaagaggaacctcattgaaaatctcaagtgatagattaaacgcagcaattaaacaaggttgtaacccatcaagttt 10336110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 9274591 - 9274684
Alignment:
Q  27 ccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaa 120  Q
    ||||||| ||||||||||||||| |||| || |||| ||  |||||||| ||||||||||||||| ||| ||||| || |||||| ||||||||    
T  9274591 ccatattctttcatcacccaaacttcaaattcagtatttcgataattcaaagtcatacaaagacacccttccaaaacaacaacattaatttcaa 9274684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 8573438 - 8573360
Alignment:
Q  160 caggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatgtaacccatcaagttt 238  Q
    ||||||| |||||||| | ||||||||||||||| |||||||| ||||||||||   |||||| | |||||||||||||    
T  8573438 caggaagaggaacctcgtagaaaatttcaagtgtgaggttaaatgcgacaattaaccaaggatatgacccatcaagttt 8573360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 7115588 - 7115500
Alignment:
Q  150 cctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatgtaacccatcaagttt 238  Q
    |||| ||| |||||||| ||||||||| |||||   ||||||||||||||||| |||||||||| | |||| ||| || ||||||||||    
T  7115588 cctaattcatcaggaagaggaacctcaatgaaacgctcaagtgttaggttaaacgcgacaattaaacaagggtgtgactcatcaagttt 7115500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 9316210 - 9316270
Alignment:
Q  151 ctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaat 211  Q
    |||||||  ||||||| |||||| |||||||||| ||||||||||||||||| ||||||||    
T  9316210 ctatttcagcaggaagaggaaccacattgaaaatctcaagtgttaggttaaacgcgacaat 9316270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 9274705 - 9274780
Alignment:
Q  159 tcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatgtaacccatcaa 234  Q
    |||||||| |||||| |||||||||| ||||||||||||||||| || ||||||| | |||| ||| || ||||||    
T  9274705 tcaggaagaggaaccacattgaaaatatcaagtgttaggttaaacgcaacaattaaacaagggtgtgactcatcaa 9274780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 9292113 - 9292173
Alignment:
Q  151 ctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaat 211  Q
    |||||||  ||||||  |||||| |||||||| | ||||||||||||||||||||||||||    
T  9292113 ctatttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaat 9292173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 12018820 - 12018768
Alignment:
Q  161 aggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaatta 213  Q
    |||||| ||||||||||||||||| || ||||| |||||||| ||||||||||    
T  12018820 aggaagaggaacctcattgaaaatatcgagtgtgaggttaaatgcgacaatta 12018768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 17566158 - 17566107
Alignment:
Q  24 aatccatattgtttcatcacccaaacatcaattttagtagtttcataattca 75  Q
    |||||||||| ||| ||||||||||||||||  |||||||||| ||||||||    
T  17566158 aatccatattctttaatcacccaaacatcaacattagtagtttgataattca 17566107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 7612153 - 7612210
Alignment:
Q  163 gaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaagg 220  Q
    |||| ||||||||||||||||| ||  |||| ||||||||||||||||| | ||||||    
T  7612153 gaagaggaacctcattgaaaatctcttgtgtaaggttaaaagcgacaatcaaagaagg 7612210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 9284129 - 9284076
Alignment:
Q  160 caggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaatta 213  Q
    ||||||| |||||||| |||||||  || |||||||||||||| ||||||||||    
T  9284129 caggaagaggaacctctttgaaaacctctagtgttaggttaaacgcgacaatta 9284076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 37462557 - 37462649
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttc---ataattcacagtcatacaaagacatcctcccaaagcagcaacatcaa 114  Q
    ||||||||| |||||||||||||||||||| |||||||||||    |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  37462557 atccatattctttcatcacccaaacatcaaatttagtagtttttttataattcacagtcatacaaagacagcctcccaaaacagcaacatcaa 37462649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 29453378 - 29453199
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaacgct 124  Q
    ||||||||| |||||||||||||||||||||||||  ||||| |||||||||| ||||||||||||| ||| ||||| | |||||| |||||||||  ||    
T  29453378 atccatattctttcatcacccaaacatcaattttaacagtttgataattcacaatcatacaaagacacccttccaaaaccgcaacaccaatttcaaaact 29453279  T
Q  125 gtcatttgaattaacctcttcttcacctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaatta 213  Q
     ||| |   |||   | ||||||||||||||   |||||||  ||||||||||||||||| ||  ||||||||||||| || |||||||    
T  29453278 ctcact---att---cacttcttcacctatt---tcaggaaaaggaacctcattgaaaatctcgtgtgttaggttaaacgcaacaatta 29453199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 29467854 - 29467650
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaacgct 124  Q
    ||||||||| |||||||| |||||||||||||||| |||||| |||||||||| |||   ||||||| ||||||||| | ||||||||||||| ||  ||    
T  29467854 atccatattctttcatcaaccaaacatcaattttactagtttgataattcacaatcaactaaagacaccctcccaaaaccgcaacatcaattttaaaact 29467755  T
Q  125 gtcatttgaattaacctcttcttcacctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatgt 224  Q
     |||     |||||   |||| | |||||||   |||||||| ||||||||||||||||| |||||  |||||||||| |||| ||||| | |||  |||    
T  29467754 ctca---acattaa---cttcataacctatt---tcaggaagaggaacctcattgaaaatctcaagctttaggttaaacgcgataattaaacaagattgt 29467664  T
Q  225 aacccatcaagttt 238  Q
    ||||||||||||||    
T  29467663 aacccatcaagttt 29467650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 212
Target Start/End: Complemental strand, 29443395 - 29443217
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaacgct 124  Q
    ||||||||| |||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| ||| ||| | | | || | |||||| ||  ||    
T  29443395 atccatattctttcatcacccaaacatcaattttagcagtttgataattcacaatcatacaaagacacccttccagaaccgaaataccaatttgaaaact 29443296  T
Q  125 gtcatttgaattaacctcttcttcacctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaatt 212  Q
     ||| |   |||||   | ||||||||||||   |||||||  ||||||||||||||||| || |||||||||||||| |||||||||    
T  29443295 ctcact---attaa---catcttcacctatt---tcaggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcgacaatt 29443217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 29423333 - 29423512
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaacgct 124  Q
    ||||||||| |||||||| ||||||||||||||||  ||||| ||||||||||||||||||||| || ||| ||| | | |||||| |||||||||  ||    
T  29423333 atccatattctttcatcagccaaacatcaattttaacagtttgataattcacagtcatacaaaggcacccttccagaaccgcaacaccaatttcaaaact 29423432  T
Q  125 gtcatttgaattaacctcttcttcacctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaatta 213  Q
     ||| |   |||   | |||||||||| |||   |||||||  ||||||||||||||||| ||| ||||||||||||| || |||||||    
T  29423433 ctcact---att---cacttcttcaccaatt---tcaggaaaaggaacctcattgaaaatctcatgtgttaggttaaacgcaacaatta 29423512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 26574929 - 26575111
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaacgct 124  Q
    ||||||||| ||||||||||||||||||||||||||||  || ||||| |||||||||||||||||| ||||| ||| ||||||||  ||||| ||  ||    
T  26574929 atccatattctttcatcacccaaacatcaattttagtatctttataatccacagtcatacaaagacaccctcctaaatcagcaacacgaattttaaaact 26575028  T
Q  125 gtcatttgaattaacctcttcttcacctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaatta 213  Q
     | | |   |||||   ||| ||| |||||||| |||||||| |||||||| |||||| | |||||||  ||||||||||||| |||||    
T  26575029 cttact---attaa---cttgttcccctatttcatcaggaagaggaacctcgttgaaagtctcaagtgaaaggttaaaagcgagaatta 26575111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 45243769 - 45243857
Alignment:
Q  27 ccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaat 115  Q
    ||||||| ||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||  |||||||| | ||| |||||||    
T  45243769 ccatattctttcatcacccaaacatcaatttcattagtttgataattcacaatcatacaaagacactctcccaaaaccgcatcatcaat 45243857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 45230502 - 45230569
Alignment:
Q  27 ccatattgtttcatcacccaaacatc---aattttagtagtttcataattcacagtcatacaaagaca 91  Q
    ||||||| ||||||||||||||||||   ||||||| |||||| |||||||||| |||||||||||||    
T  45230502 ccatattctttcatcacccaaacatcatcaattttattagtttgataattcacaatcatacaaagaca 45230569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 45238018 - 45238059
Alignment:
Q  25 atccatattgtttcatcacccaaacatcaattttagtagttt 66  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  45238018 atccatattctttcatcacccaaacatcaatttgagtagttt 45238059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 41966673 - 41966585
Alignment:
Q  149 acctatttcgtcaggaagtggaacctcattgaaaatttcaagtgttaggttaaaagcgacaattagagaaggatgtaacccatcaagtt 237  Q
    |||||||||  ||||||| |||||||  |||||||| ||||||||||||||||| |||||||||| | |||| ||||| ||||||||||    
T  41966673 acctatttcagcaggaagaggaacctggttgaaaatctcaagtgttaggttaaacgcgacaattaaacaagggtgtaatccatcaagtt 41966585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 41966775 - 41966684
Alignment:
Q  29 atattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaatttcaa 120  Q
    ||||| ||||||||||||||||||||  |   |||||| ||||| ||||  |||||||||||| ||||||||| ||| ||||  ||||||||    
T  41966775 atattctttcatcacccaaacatcaacatcgctagtttgataatccacaaccatacaaagacaccctcccaaaacagaaacagaaatttcaa 41966684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 36224485 - 36224532
Alignment:
Q  24 aatccatattgtttcatcacccaaacatcaattttagtagtttcataa 71  Q
    |||||||||| |||||||||||||||||||| |||| ||||| |||||    
T  36224485 aatccatattctttcatcacccaaacatcaaatttattagttccataa 36224532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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