View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_low_39 (Length: 226)
Name: NF17873_low_39
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 4782669 - 4782878
Alignment:
| Q |
1 |
catggggaatggagggttatatgcatatcaaaaggaacacaaataaaaagtatggggtgtgtgctataaattcatgggcttataatccagtcaaatataa |
100 |
Q |
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| T |
4782669 |
catggggaatggagggttatatgcatatcaaaaggaacacaaataaaaagtatggggtgtgtgctataaattcatgggcttataatccagtcaaatataa |
4782768 |
T |
|
| Q |
101 |
tggaaggaaaccaaatattagttccattttagatcaacaataagttaaagcaagaattatggttgtatgcatatagaatttgtttgtgtgggcattgttg |
200 |
Q |
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| T |
4782769 |
tggaaggaaaccaaatattagttccattttagatcaacaataagttaaagcaagaattatggttttatgcatatagaatttgtttgtgtgggcattgttg |
4782868 |
T |
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| Q |
201 |
atgttgtttt |
210 |
Q |
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|||||||||| |
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| T |
4782869 |
atgttgtttt |
4782878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4787415 - 4787515
Alignment:
| Q |
1 |
catggggaatggagggttatatgcatatcaaaaggaacacaaataaaaagtatggggtgtgtgctataaattcatgggcttataatccagtcaaatataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| || ||| |||||| |||||||||||||||||||| |
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| T |
4787415 |
catggggaatggagggttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcatataatccagtcaaatataa |
4787514 |
T |
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| Q |
101 |
t |
101 |
Q |
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| T |
4787515 |
t |
4787515 |
T |
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