View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17873_low_4 (Length: 541)

Name: NF17873_low_4
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17873_low_4
NF17873_low_4
[»] chr5 (1 HSPs)
chr5 (1-541)||(36717641-36718183)
[»] chr8 (9 HSPs)
chr8 (269-541)||(2040772-2041049)
chr8 (269-497)||(1352638-1352872)
chr8 (375-541)||(1357729-1357894)
chr8 (351-497)||(1364589-1364735)
chr8 (261-382)||(10043768-10043881)
chr8 (1-204)||(2040544-2040764)
chr8 (59-235)||(1357910-1358092)
chr8 (167-204)||(1352880-1352917)
chr8 (130-166)||(1352933-1352969)
[»] chr3 (2 HSPs)
chr3 (296-495)||(24619728-24619936)
chr3 (302-354)||(18179206-18179255)


Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Complemental strand, 36718183 - 36717641
Alignment:
Q  1 tggattactttgcgaatatgatacaggattcattgaaacaataataatgagacaaagagagtttcaatagaataccttgacttatcaaaataagagagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36718183 tggattactttgcgaatatgatacaggattcattgaaacaataataatgagacaaagagagtttcaatagaataccttgacttatcaaaataagagagtt 36718084  T
Q  101 acaatgaaaatatagc---cttatctaaaaggaaataatgatatatagcattgttattctcattgcctgtcttaaaaagtgagatatttggaagttgaac 197  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36718083 acaatgaaaatatagcattcttatctaaaaggaaataatgatatatagcattgttattctcattgcctgtcttaaaaagtgagatatttggaagttgaac 36717984  T
Q  198 caattccacccatgcttccagttttgatgatgcctgatgatttactactcatcttctggatacaattattcttcattgctgtgatattttttacctcaaa 297  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36717983 caattccacccatgcttccagttttgatgatgcctgatgaattactactcttcttctggttacaattattcttcattgctgtgatattttttacctcaaa 36717884  T
Q  298 actattaagaaaatctttctttgacttcttcattatgttgctgctcttcacatttgatccaggtccgttgtctccagaaaatcttcttttactgggtgga 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  36717883 actattaagaaaatctttctttgacttcttcattatgttgctgctcttcacatttgatccaggtccgttgtctccagaaaatcttcttttattaggtgga 36717784  T
Q  398 actatggtgcatgtttttattttcctgctttgttttcttgcatcttcttccttgtagcattgcgcaagtcgatcaactgcttcattctcaacctgagcca 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||    
T  36717783 actatggtgcatgtttttattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgcgagtcgatcaactgcttcattctcagcctgagcca 36717684  T
Q  498 nnnnnnnnnaccttagcctcatacagctgcaaccaagtgaatga 541  Q
             |||||||||||||||||||||||||||||||||||    
T  36717683 -ttttttttaccttagcctcatacagctgcaaccaagtgaatga 36717641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 7e-75; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 269 - 541
Target Start/End: Original strand, 2040772 - 2041049
Alignment:
Q  269 ttcattgctgtgatattttttacctcaaaactattaagaaaatctttctttgacttcttcattatgttgctgctcttcac-----atttg-atccaggtc 362  Q
    |||||||||||| ||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||     | ||| |||||| ||    
T  2040772 ttcattgctgtgttatttttgacctccaagctattaagaaaatccttctttgacttcttcattatgttgctgctcttcactgacaagttgtatccagatc 2040871  T
Q  363 cgttgtctccagaaaatcttcttttactgggtggaactatggtgcatgtttttattttcctgctttgttttcttgcatcttcttccttgtagcattgcgc 462  Q
    | || |||||| ||||||||||||  |||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  2040872 cattatctccacaaaatcttctttcgctgggtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgc 2040971  T
Q  463 aagtcgatcaactgcttcattctcaacctgagccannnnnnnnnaccttagcctcatacagctgcaaccaagtgaatga 541  Q
     ||||||||||||||||||||||||  ||||||||         |||||||||||||||||||||||||||||||||||    
T  2040972 gagtcgatcaactgcttcattctcagtctgagcca-ctcttttgaccttagcctcatacagctgcaaccaagtgaatga 2041049  T

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Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 269 - 497
Target Start/End: Complemental strand, 1352872 - 1352638
Alignment:
Q  269 ttcattgctgtgatattttttacctcaaaactattaagaaaatctttctttgacttcttcattatgttgctgctcttcac-----atttg-atccaggtc 362  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     | ||| |||||| ||    
T  1352872 ttcattgctgtgatatttttgacctcaaaactattaagaaaatccttctttgacttcttcattatgttgctgctcttcactgacaagttgtatccagatc 1352773  T
Q  363 cgttgtctccagaaaatcttcttttactgggtggaactatggtgcatgtttttattttcctgctttgttttcttgcatcttcttccttgtagcattgcgc 462  Q
    | || |||||| |||||||||||| ||||||||||| | ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| || ||     
T  1352772 cattatctccacaaaatcttctttcactgggtggaagtttggtgcatgttttgatttgcctgctttgttttcttgcatcttcttccttgtagcgtttcgt 1352673  T
Q  463 aagtcgatcaactgcttcattctcaacctgagcca 497  Q
     |||||||||||||||||||||||| || ||||||    
T  1352672 gagtcgatcaactgcttcattctcagcccgagcca 1352638  T

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Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 375 - 541
Target Start/End: Complemental strand, 1357894 - 1357729
Alignment:
Q  375 aaaatcttcttttactgggtggaactatggtgcatgtttttattttcctgctttgttttcttgcatcttcttccttgtagcattgcgcaagtcgatcaac 474  Q
    |||||||||||||||| ||||||| | ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  1357894 aaaatcttcttttacttggtggaagtttggtgcatgttttgatttgcctgctttgttttcttgcatcttcttccttgtagcgttgcgcgagtcgatcaac 1357795  T
Q  475 tgcttcattctcaacctgagccannnnnnnnnaccttagcctcatacagctgcaaccaagtgaatga 541  Q
    |||||||||||||  ||||||||         |||||||||||||||||||||||||||||||||||    
T  1357794 tgcttcattctcagtctgagcca-cttttttgaccttagcctcatacagctgcaaccaagtgaatga 1357729  T

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Target: chr8; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 351 - 497
Target Start/End: Complemental strand, 1364735 - 1364589
Alignment:
Q  351 ttgatccaggtccgttgtctccagaaaatcttcttttactgggtggaactatggtgcatgtttttattttcctgctttgttttcttgcatcttcttcctt 450  Q
    ||||||||||||| |  |||||| |||||||||||||||| ||||||| | ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  1364735 ttgatccaggtccatcatctccacaaaatcttcttttacttggtggaagtttggtgcatgttttgatttgcctgctttgttttcttgcatcttcttcctt 1364636  T
Q  451 gtagcattgcgcaagtcgatcaactgcttcattctcaacctgagcca 497  Q
    ||||| |||||  |||||||||||||||||||||||| || ||||||    
T  1364635 gtagcgttgcgtgagtcgatcaactgcttcattctcagcccgagcca 1364589  T

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Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 261 - 382
Target Start/End: Original strand, 10043768 - 10043881
Alignment:
Q  261 aattattcttcattgctgtgatattttttacctc-aaaactattaagaaaatctttctttgacttcttcattatgttgctgctcttcacatttgatccag 359  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||         | |||||||||||||||||||||||||    
T  10043768 aattattcttcattgctgtgatattttttacctcaaaaactattaagaaaatctttctttgact---------tattgctgctcttcacatttgatccag 10043858  T
Q  360 gtccgttgtctccagaaaatctt 382  Q
    |||| || |||||| ||||||||    
T  10043859 gtccattatctccacaaaatctt 10043881  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 2040544 - 2040764
Alignment:
Q  1 tggattactttgcgaatatgatacaggattcattgaaacaataataatgagacaaagagagtttca--atagaataccttgacttatcaaaataagag-- 96  Q
    |||||||||||  ||| |||||| ||||||||||||||||||||||| |||||||  |||||||||  |||||||||    |||||||||| ||||||      
T  2040544 tggattacttttggaacatgataaaggattcattgaaacaataataaggagacaa--agagtttcaatatagaatac----acttatcaaagtaagagtt 2040637  T
Q  97 ---agttacaatgaaaata-tagccttatctaaaaggaaataatgatatatagcattgttattctcattgcctg---------------tcttaaaaagt 177  Q
       | ||||||||||| ||  |   ||||||||||| ||||||||||| |||||||||||||  ||||||||||               |||||||||||    
T  2040638 acaacttacaatgaaactagcattgttatctaaaagcaaataatgatacatagcattgttatcttcattgcctgaccctaaaatttcgttcttaaaaagt 2040737  T
Q  178 gagatatttggaagttgaaccaattcc 204  Q
    |||||||||||||||||||||||||||    
T  2040738 gagatatttggaagttgaaccaattcc 2040764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 59 - 235
Target Start/End: Complemental strand, 1358092 - 1357910
Alignment:
Q  59 gagtttcaatagaataccttgacttatcaaaataagagagttacaatgaaaatatagccttatctaaaaggaaataatgatatatagcattgttattctc 158  Q
    |||||||||||||||||| |||||||||||||||||||  ||||  ||||||||||   |     ||||  ||||||||||| ||||||||||||| |||    
T  1358092 gagtttcaatagaataccatgacttatcaaaataagag--ttaccgtgaaaatatacggt-----aaaatcaaataatgatacatagcattgttatcctc 1358000  T
Q  159 attgcctgtc--------------ttaaaaagtgagatatttggaagttgaaccaattccacccatgcttccagttttgatgatgcctgat 235  Q
    |||||||| |              ||||||||||||||| |||||||||||| |||||| || |||||||| |||||| ||||||||||||    
T  1357999 attgcctgcccctaaaaaatatccttaaaaagtgagatacttggaagttgaaacaattcaacacatgcttcaagtttt-atgatgcctgat 1357910  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 1352917 - 1352880
Alignment:
Q  167 tcttaaaaagtgagatatttggaagttgaaccaattcc 204  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1352917 tcttaaaaagtgagatatttggaagttgaaccaattcc 1352880  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 1352969 - 1352933
Alignment:
Q  130 aaataatgatatatagcattgttattctcattgcctg 166  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  1352969 aaataatgatacatagcattgttatcctcattgcctg 1352933  T

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Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 296 - 495
Target Start/End: Original strand, 24619728 - 24619936
Alignment:
Q  296 aaactattaagaaaatctttctttgacttcttcattatgttgctgctcttcacatttga---------tccaggtccgttgtctccagaaaatcttcttt 386  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||         || |||||| ||  ||||| | ||||||||||    
T  24619728 aaacaattaagaaaatatttctttgatttcttcattatgttgctgctcttcacatttgagaagttgtatctaggtccattacctccacacaatcttcttt 24619827  T
Q  387 tactgggtggaactatggtgcatgtttttattttcctgctttgttttcttgcatcttcttccttgtagcattgcgcaagtcgatcaactgcttcattctc 486  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||| |     
T  24619828 tactaggtggaattttggtgcatgtttttattttcctgctttgttttcttgcatcttcttccttttagcattgcgtgggtcgatcaactgcttcattttt 24619927  T
Q  487 aacctgagc 495  Q
    |||||||||    
T  24619928 aacctgagc 24619936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 18179206 - 18179255
Alignment:
Q  302 ttaagaaaatctttctttgacttcttcattatgttgctgctcttcacatttga 354  Q
    |||||||| ||| |||||||||||||||||||||   ||||||||||||||||    
T  18179206 ttaagaaattctatctttgacttcttcattatgt---tgctcttcacatttga 18179255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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