View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17873_low_41 (Length: 212)

Name: NF17873_low_41
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17873_low_41
NF17873_low_41
[»] chr3 (1 HSPs)
chr3 (46-125)||(7401112-7401191)
[»] chr2 (3 HSPs)
chr2 (46-125)||(31338301-31338380)
chr2 (46-125)||(30269642-30269721)
chr2 (46-125)||(31331572-31331651)
[»] chr8 (1 HSPs)
chr8 (46-125)||(25641530-25641609)
[»] chr4 (2 HSPs)
chr4 (46-125)||(8238817-8238896)
chr4 (46-123)||(53303053-53303130)
[»] chr5 (2 HSPs)
chr5 (58-125)||(5075564-5075631)
chr5 (58-125)||(7413594-7413661)


Alignment Details
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 7401112 - 7401191
Alignment:
Q  46 aacatgaccgcaaagctaaatgtgcgattacaatcacaggtgaattcacaattcttcaattccgaattcaatttcatctt 125  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7401112 aacatggccgcaaagctaaatgtgcgattacaatcacaggtgaattcacaattcttcaattccgaattcaatttcatctt 7401191  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 31338301 - 31338380
Alignment:
Q  46 aacatgaccgcaaagctaaatgtgcgattacaatcacaggtgaattcacaattcttcaattccgaattcaatttcatctt 125  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31338301 aacatggccgcaaagctaaatgtgcgattacaatcacaggtgaattcacaattcttcaattccgaattcaatttcatctt 31338380  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 30269721 - 30269642
Alignment:
Q  46 aacatgaccgcaaagctaaatgtgcgattacaatcacaggtgaattcacaattcttcaattccgaattcaatttcatctt 125  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30269721 aacatggccgcaaagctaaatgtgcgattccaatcacaggtgaattcacagttcttcaattccgaattcaatttcatctt 30269642  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 31331572 - 31331651
Alignment:
Q  46 aacatgaccgcaaagctaaatgtgcgattacaatcacaggtgaattcacaattcttcaattccgaattcaatttcatctt 125  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31331572 aacatggcctcaaagctaaatgtgcgattacaatcacaggtgaattcacaattcttcaattccaaattcaatttcatctt 31331651  T

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Target: chr8 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 25641609 - 25641530
Alignment:
Q  46 aacatgaccgcaaagctaaatgtgcgattacaatcacaggtgaattcacaattcttcaattccgaattcaatttcatctt 125  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25641609 aacatggcctcaaagctaaatgtgcgattacaatcacaggtgaattcacaattcttcaattccaaattcaatttcatctt 25641530  T

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Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 8238896 - 8238817
Alignment:
Q  46 aacatgaccgcaaagctaaatgtgcgattacaatcacaggtgaattcacaattcttcaattccgaattcaatttcatctt 125  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8238896 aacatggccgcaaagctaaatgtgcgattccaatcacaggtgaattcacagttcttcaattccgaattcaatttcatctt 8238817  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 53303130 - 53303053
Alignment:
Q  46 aacatgaccgcaaagctaaatgtgcgattacaatcacaggtgaattcacaattcttcaattccgaattcaatttcatc 123  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  53303130 aacatggccgcaaagctaaatgtgcgattccaatcacaggtgaattcacagttcttcaattccgaattcaatttcatc 53303053  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 5075564 - 5075631
Alignment:
Q  58 aagctaaatgtgcgattacaatcacaggtgaattcacaattcttcaattccgaattcaatttcatctt 125  Q
    ||||||||||||||||| | ||||||||||||||| |||  ||||||||||| |||| ||||||||||    
T  5075564 aagctaaatgtgcgattccgatcacaggtgaattctcaaaccttcaattccgtattcgatttcatctt 5075631  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 7413661 - 7413594
Alignment:
Q  58 aagctaaatgtgcgattacaatcacaggtgaattcacaattcttcaattccgaattcaatttcatctt 125  Q
    ||||||||||||||||| | ||||| ||||||||| |||  ||||||||||| |||| ||||||||||    
T  7413661 aagctaaatgtgcgattccgatcactggtgaattctcaaaccttcaattccgtattcgatttcatctt 7413594  T

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