View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17873_low_44 (Length: 202)

Name: NF17873_low_44
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17873_low_44
NF17873_low_44
[»] chr2 (1 HSPs)
chr2 (7-161)||(36277746-36277900)
[»] chr8 (3 HSPs)
chr8 (12-63)||(28979021-28979072)
chr8 (11-65)||(14011086-14011140)
chr8 (19-65)||(18123853-18123899)
[»] chr4 (3 HSPs)
chr4 (12-71)||(36045817-36045876)
chr4 (13-47)||(9302693-9302727)
chr4 (12-64)||(30615991-30616044)
[»] chr5 (6 HSPs)
chr5 (10-63)||(35813289-35813342)
chr5 (12-64)||(13862119-13862171)
chr5 (13-64)||(42553190-42553241)
chr5 (18-64)||(28537129-28537175)
chr5 (19-64)||(3535992-3536037)
chr5 (18-58)||(41405143-41405183)
[»] chr6 (7 HSPs)
chr6 (16-64)||(9443516-9443564)
chr6 (13-64)||(8175990-8176041)
chr6 (11-64)||(10455736-10455789)
chr6 (12-69)||(30833006-30833063)
chr6 (11-64)||(34524869-34524922)
chr6 (11-63)||(12341416-12341468)
chr6 (11-63)||(31639136-31639188)
[»] chr1 (6 HSPs)
chr1 (18-66)||(24119298-24119346)
chr1 (9-64)||(7906372-7906427)
chr1 (8-61)||(7015732-7015785)
chr1 (11-64)||(18003810-18003863)
chr1 (11-64)||(52961130-52961183)
chr1 (12-64)||(9768858-9768910)
[»] scaffold0168 (1 HSPs)
scaffold0168 (11-64)||(34081-34134)
[»] chr3 (2 HSPs)
chr3 (11-64)||(16874238-16874291)
chr3 (12-60)||(3461773-3461821)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 36277746 - 36277900
Alignment:
Q  7 ttcagcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggacgtaatttgtaattttttaaagttgtctattatagacatttgt 106  Q
    |||| ||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36277746 ttcaacccctacatataacaatgcatgtcactgccaactgagctatgctcacggggacgtaatttgtaattttttaaagttgtctattatagacatttgt 36277845  T
Q  107 tccgttaaaatatgagttattgaaagnnnnnnnnnctaaattaattgaagtgtaa 161  Q
    ||||||||||||||||||||||||||         ||||||||||||||||||||    
T  36277846 tccgttaaaatatgagttattgaaagcaaaaaaaactaaattaattgaagtgtaa 36277900  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 28979072 - 28979021
Alignment:
Q  12 cccctacatataacaatgcatgtcagtgtcaattgaactatgctcacgggga 63  Q
    ||||||||||||||||||||||||  | |||| |||||||||||||||||||    
T  28979072 cccctacatataacaatgcatgtccctatcaactgaactatgctcacgggga 28979021  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 14011086 - 14011140
Alignment:
Q  11 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggacg 65  Q
    |||||| ||||||||||||||||||  || ||| |||||||||||||| ||||||    
T  14011086 gcccctgcatataacaatgcatgtccctgccaactgaactatgctcacagggacg 14011140  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 18123899 - 18123853
Alignment:
Q  19 atataacaatgcatgtcagtgtcaattgaactatgctcacggggacg 65  Q
    ||||||||||| || ||  ||||||||||||||||||||||||||||    
T  18123899 atataacaatgtatatccctgtcaattgaactatgctcacggggacg 18123853  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 36045876 - 36045817
Alignment:
Q  12 cccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggacgtaattt 71  Q
    ||||| ||||||||||||||||||  |||||||||| |||||||||| ||||| ||||||    
T  36045876 cccctgcatataacaatgcatgtccctgtcaattgagctatgctcactgggacataattt 36045817  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 9302693 - 9302727
Alignment:
Q  13 ccctacatataacaatgcatgtcagtgtcaattga 47  Q
    ||||||||||||||||||||||| |||||||||||    
T  9302693 ccctacatataacaatgcatgtccgtgtcaattga 9302727  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 30616044 - 30615991
Alignment:
Q  12 cccctacatataacaatgcat-gtcagtgtcaattgaactatgctcacggggac 64  Q
    ||||| ||||||||||||||| |||  |||||||||| ||||||||||||||||    
T  30616044 cccctgcatataacaatgcattgtccatgtcaattgagctatgctcacggggac 30615991  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 35813289 - 35813342
Alignment:
Q  10 agcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacgggga 63  Q
    ||||||| ||||||||||||||||||  |||||| ||| |||||||||||||||    
T  35813289 agcccctgcatataacaatgcatgtccctgtcaactgagctatgctcacgggga 35813342  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 13862171 - 13862119
Alignment:
Q  12 cccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 64  Q
    ||||| ||||||||||||||| ||  |||||| ||||||||||||||||||||    
T  13862171 cccctgcatataacaatgcatatccatgtcaactgaactatgctcacggggac 13862119  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 42553190 - 42553241
Alignment:
Q  13 ccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 64  Q
    |||| ||||||||||||||||||  |||||| ||| ||||||||||||||||    
T  42553190 ccctgcatataacaatgcatgtcgttgtcaactgagctatgctcacggggac 42553241  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 28537175 - 28537129
Alignment:
Q  18 catataacaatgcatgtcagtgtcaattgaactatgctcacggggac 64  Q
    ||||||||||||||||||  ||||||||||  |||||||||||||||    
T  28537175 catataacaatgcatgtccatgtcaattgagttatgctcacggggac 28537129  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 3535992 - 3536037
Alignment:
Q  19 atataacaatgcatgtcagtgtcaattgaactatgctcacggggac 64  Q
    |||||||||||||||||  || ||| ||||||||||||||||||||    
T  3535992 atataacaatgcatgtccctgccaactgaactatgctcacggggac 3536037  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 41405143 - 41405183
Alignment:
Q  18 catataacaatgcatgtcagtgtcaattgaactatgctcac 58  Q
    ||||||||||||||||||  |||||| ||||||||||||||    
T  41405143 catataacaatgcatgtccctgtcaactgaactatgctcac 41405183  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 9443516 - 9443564
Alignment:
Q  16 tacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 64  Q
    |||||||||||||||||||| || |||| ||| ||||||||||||||||    
T  9443516 tacatataacaatgcatgtccgtatcaactgagctatgctcacggggac 9443564  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 8176041 - 8175990
Alignment:
Q  13 ccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 64  Q
    |||| ||||||||||||||||||  |||||| ||| ||||||||||||||||    
T  8176041 ccctgcatataacaatgcatgtctctgtcaactgagctatgctcacggggac 8175990  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 10455789 - 10455736
Alignment:
Q  11 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 64  Q
    |||||| |||||||||||||||||   || ||| ||||||||||||||||||||    
T  10455789 gcccctgcatataacaatgcatgttcctgccaactgaactatgctcacggggac 10455736  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 30833063 - 30833006
Alignment:
Q  12 cccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggacgtaat 69  Q
    ||||| ||||||||||||||||||  || ||| ||||||||||||| |||||| ||||    
T  30833063 cccctgcatataacaatgcatgtccctgccaactgaactatgctcatggggacttaat 30833006  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 34524922 - 34524869
Alignment:
Q  11 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 64  Q
    |||||| ||||||||||||||||||  || ||| ||| ||||||||||||||||    
T  34524922 gcccctgcatataacaatgcatgtccctgccaactgagctatgctcacggggac 34524869  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 12341468 - 12341416
Alignment:
Q  11 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacgggga 63  Q
    |||||||||||||| |||| ||||   |||||| |||||||||||||||||||    
T  12341468 gcccctacatataataatgtatgttcctgtcaactgaactatgctcacgggga 12341416  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 31639188 - 31639136
Alignment:
Q  11 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacgggga 63  Q
    |||||||||||||||||||| ||||  |||||| |||  ||||||||||||||    
T  31639188 gcccctacatataacaatgcgtgtccctgtcaactgagttatgctcacgggga 31639136  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 24119346 - 24119298
Alignment:
Q  18 catataacaatgcatgtcagtgtcaattgaactatgctcacggggacgt 66  Q
    ||||||||||||||||||  |||||| ||||||||| ||||||||||||    
T  24119346 catataacaatgcatgtccttgtcaactgaactatgttcacggggacgt 24119298  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 7906372 - 7906427
Alignment:
Q  9 cagcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 64  Q
    |||||||| ||||||||||||||||||  |  ||| ||||||||||||||||||||    
T  7906372 cagcccctgcatataacaatgcatgtccctaccaactgaactatgctcacggggac 7906427  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 7015732 - 7015785
Alignment:
Q  8 tcagcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggg 61  Q
    ||||||||||||||||||||||||||||   | ||| ||| |||||||||||||    
T  7015732 tcagcccctacatataacaatgcatgtcccagccaactgagctatgctcacggg 7015785  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 18003863 - 18003810
Alignment:
Q  11 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 64  Q
    |||||| ||||||||||||||||||  || ||| ||| ||||||||||||||||    
T  18003863 gcccctgcatataacaatgcatgtccctgccaactgagctatgctcacggggac 18003810  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 52961130 - 52961183
Alignment:
Q  11 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 64  Q
    |||||| ||||||||||||||||||  || ||| ||| ||||||||||||||||    
T  52961130 gcccctgcatataacaatgcatgtccttgccaactgagctatgctcacggggac 52961183  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 9768858 - 9768910
Alignment:
Q  12 cccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 64  Q
    ||||| ||||||||||||||||||  || ||| ||| ||||||||||||||||    
T  9768858 cccctgcatataacaatgcatgtccctgccaactgagctatgctcacggggac 9768910  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 34081 - 34134
Alignment:
Q  11 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 64  Q
    |||||| ||||||||||||||||||  || ||| ||| ||||||||||||||||    
T  34081 gcccctgcatataacaatgcatgtccctgccaactgagctatgctcacggggac 34134  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 16874238 - 16874291
Alignment:
Q  11 gcccctacatataacaatgcatgtcagtgtcaattgaactatgctcacggggac 64  Q
    |||||| ||||||||||||||||||  || ||| ||| ||||||||||||||||    
T  16874238 gcccctgcatataacaatgcatgtccctgccaactgagctatgctcacggggac 16874291  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 3461773 - 3461821
Alignment:
Q  12 cccctacatataacaatgcatgtcagtgtcaattgaactatgctcacgg 60  Q
    ||||||||||||||||||||||||  |||||| |||  |||||||||||    
T  3461773 cccctacatataacaatgcatgtccctgtcaactgagttatgctcacgg 3461821  T

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