View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17873_low_5 (Length: 485)
Name: NF17873_low_5
Description: NF17873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17873_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 33633117 - 33633588
Alignment:
| Q |
1 |
attaacaaatgcacgaatcaacactgtattgttaaaagtcgtgatggaatagcaattaccaaaatcaaatgcatgaacagataaagttagaaagacaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33633117 |
attaacaaatgcacgaatcaacactgtattgttacaagtcgcgatggaatagcaattaccaaaatcaaatgcatgaacggataaagttagaaagacaaat |
33633216 |
T |
|
| Q |
101 |
acctaacgtattgctatgaaatccaaagcaaaaaagtactccaacgaacgaattcaatggactaacttcttaagtcgcgttaaaatatagtaaatatagt |
200 |
Q |
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||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33633217 |
acctaacatattgctatgaagtccaaagcaaaaaagtactctaacgaacgaattcaatggactaacttcttaagtcacgttaaaatatagtaaatatagt |
33633316 |
T |
|
| Q |
201 |
taagttgttcattcaaaaatatgagttgctccaacacaatagaacttcttcagttaaatcagtcctcacattttagttcaaaattgcagtccacaatccc |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33633317 |
taagttggtcattcaaaaatatgagttgctccaacacaatagaacttcttcagttaaatcagtcctcacattttagttcaaaattgcagtccacaatccc |
33633416 |
T |
|
| Q |
301 |
gattgttgcaactaggttttagcagtatcgcaatggtaacgtaattgtaattgcggccaaattgactgttttattcatattttaacataataacaaaatt |
400 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33633417 |
gattgtttcaactaggttttagcagtatcgcaatggtaacgtaattgtaattgcggccaaattgactgttttattcatattttaacataataacaaaatt |
33633516 |
T |
|
| Q |
401 |
tgcagcttgactcaaaccgcacatcacatcaaaatatgaaatgtacatccagaactaatttatgttaaaaat |
472 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33633517 |
tgcagcttgactcaaaccgcacattacatcaaaatatgaaatgtacacccagaactaatttatgttaaaaat |
33633588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 61 - 363
Target Start/End: Complemental strand, 29192763 - 29192467
Alignment:
| Q |
61 |
aaaatcaaatgcatgaacagataaagttagaaagacaaatacctaacgtattgctatgaaatccaaagcaaaaaagtactccaacgaacgaattcaatgg |
160 |
Q |
| |
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||||||| || ||||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||||||| || ||||||||||||||| |
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| T |
29192763 |
aaaatcatatacatgaacagataaagttagaaaggcaattacctaac--attgctatgaaatccactacaaaaaagtactcaaaagaacgaattcaatgg |
29192666 |
T |
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| Q |
161 |
actaacttcttaagtcgcgttaaaatatagtaaatatagttaagttgttcattcaaaaatatgagttgctccaacacaatagaacttcttcagttaaatc |
260 |
Q |
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|||||||| | ||||| | ||||||| ||||||||||| ||||| || |||||||||||||||||||| ||| |||||||||| ||||||||||||| |
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| T |
29192665 |
actaacttttcaagtcacattaaaatctagtaaatata----agttgatccttcaaaaatatgagttgctcgaacgcaatagaactccttcagttaaatc |
29192570 |
T |
|
| Q |
261 |
agtcctcacattttagttcaaaattgcagtccacaatcccgattgttgcaactaggttttagcagtatcgcaatggtaacgtaattgtaattgcggccaa |
360 |
Q |
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|||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| | ||| ||||| ||||||| |||| ||||||| |
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| T |
29192569 |
agtcctaacattttagttcaaaattgcagtctacaatcccaattgttgcaactaggttttagaagtccctcaacggtaatgtaattgcaattacggccaa |
29192470 |
T |
|
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