View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17874_high_1 (Length: 319)
Name: NF17874_high_1
Description: NF17874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17874_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 44866933 - 44866630
Alignment:
| Q |
1 |
ctaagtcagcttccacatgcacaaagacgaacttgatcggattaaattttgaannnnnnnnnnnnnnnnn-atttataaaaagttattataaattggtaa |
99 |
Q |
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| T |
44866933 |
ctaagtcggcttccacgtgcacaaagacgaacttgatcggattaaattttgaattttttttacttttttttatttataaaaagttattataaattggtaa |
44866834 |
T |
|
| Q |
100 |
aattgatccttgaattatattcattaaaaattaagttccaacataaaatatttgtaatgacattccatcctctaaacaagcccaaacgtttaagacgaca |
199 |
Q |
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| T |
44866833 |
aattgatccttgaattatattcattaaaaattaagttccaacataaaatatttgtaatgacattccatcctctaaacaagcccaaacgtttaagacgaca |
44866734 |
T |
|
| Q |
200 |
ggtccgttctttaggagagagtcacttgtgatcgagttgatgccgctgagtagatacagtgtaacttgaatttctctcttcatctcaatttttagggttt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44866733 |
ggtccgttctttaggagagagtcacttgtgatcgagttgatgccgctgagtagatacagtgtaacttgaatttctctcttcatctcaatttttagggttt |
44866634 |
T |
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| Q |
300 |
tcgt |
303 |
Q |
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|||| |
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| T |
44866633 |
tcgt |
44866630 |
T |
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