View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17874_low_1 (Length: 442)
Name: NF17874_low_1
Description: NF17874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17874_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 49237436 - 49237044
Alignment:
| Q |
8 |
cgaagaatatatataagaaaatatatccatttatttgaatgtcttattatcccttacaagttaaaataaatacatatttggtggatgtaatattcgttat |
107 |
Q |
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| T |
49237436 |
cgaaaaatatatataagaaaatatatccatttatttgaatgccttattaccccttacaagttaaaataaatacatatttggtggatgtaatattcgttat |
49237337 |
T |
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| Q |
108 |
taaattatttataaagaaaaaaccaatctaaacacattagtggaattcaccaaaaagaaaattgtgtatgannnnnnnaagggaaaattgtgtatgattg |
207 |
Q |
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| T |
49237336 |
taaattatttataaagaaaaaatcaatctaaacacattagtggaattcaccaaaaagaaaattgtgtatgatttttttaagggaaaaatgtgtatgattg |
49237237 |
T |
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| Q |
208 |
gatgtatgtaggagtatgtatgtgtatgnnnnnnnctccagagaaggttctaaaactaaaatcggttacaaaaactgacagcgtaagagcaatgcttaac |
307 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49237236 |
gatgtatgtaggagtatgtatgtgtatgtttttttctccggagaaggttctaaaactaaaatcggttacaaaaactgacagcgtaagagcaatgcttaac |
49237137 |
T |
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| Q |
308 |
aattgtgttctatcaattttannnnnnnngttgaagaaattgtgttctatcaatttactcactggaatataaaagtcaacattaaattttataca |
402 |
Q |
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| T |
49237136 |
aattgtgttctatcaatttt--tttttttttttaagaaattgtgttctatcaatttactcactggaatataaaagtcaacattaaattttataca |
49237044 |
T |
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