View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17874_low_3 (Length: 272)
Name: NF17874_low_3
Description: NF17874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17874_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 36853196 - 36852950
Alignment:
| Q |
18 |
tgtgaaatgcagaaataggactgaattcaaaccccaagtgccactcaccaactttgtcagaaatcccaggcgatgaatccaacaaagcaccaacaccaac |
117 |
Q |
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| T |
36853196 |
tgtgagatgcagaaataggactgaattcaaaccccaagtgccactcaccaactttgtcagaaatcccaggcgatgaatccaacaaagcaccaacaccaac |
36853097 |
T |
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| Q |
118 |
cacactattaccctgctttggcgattcaacctttaaaaataaatacagattataagttaaatgaaacccattacgtgaaaaaacaaaaggtctgtataat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36853096 |
cacactattaccctgctttggcgattcaacctttaaaaataaatacatattataagttaaatgaaacccattacgtgaaaaaacaaaaggtctgtatgat |
36852997 |
T |
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| Q |
218 |
taagcaaacatgtgttactgtgatgaatcctgaaatgaatctcttgc |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36852996 |
taagcaaacatgtgttactgtgatgaatcctgaaatgaatctcttgc |
36852950 |
T |
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