View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17875_low_1 (Length: 501)

Name: NF17875_low_1
Description: NF17875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17875_low_1
NF17875_low_1
[»] chr8 (4 HSPs)
chr8 (413-485)||(44541891-44541964)
chr8 (436-480)||(12520438-12520482)
chr8 (380-480)||(33384725-33384826)
chr8 (377-405)||(24579856-24579884)
[»] chr6 (2 HSPs)
chr6 (413-480)||(15494405-15494472)
chr6 (436-480)||(13278700-13278744)
[»] chr5 (3 HSPs)
chr5 (378-480)||(10237001-10237104)
chr5 (378-480)||(17095454-17095557)
chr5 (377-405)||(43585358-43585386)
[»] chr4 (1 HSPs)
chr4 (438-480)||(13136646-13136688)
[»] chr1 (1 HSPs)
chr1 (375-480)||(9862076-9862182)
[»] chr2 (1 HSPs)
chr2 (377-480)||(13510984-13511088)
[»] chr7 (2 HSPs)
chr7 (440-480)||(20345749-20345789)
chr7 (439-471)||(30869024-30869056)
[»] chr3 (1 HSPs)
chr3 (436-480)||(43899018-43899062)


Alignment Details
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 413 - 485
Target Start/End: Complemental strand, 44541964 - 44541891
Alignment:
Q  413 gaatttaagatttgaatgttggtccaaaaggatttgaggccttaaaa-ttgatcaactaaactagataatattg 485  Q
    ||||||||||||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||||    
T  44541964 gaatttaagatttgaatgttggtccaaaaggatttaaaaccttaaaatttgatcaactaaactagataatattg 44541891  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 12520438 - 12520482
Alignment:
Q  436 ccaaaaggatttgaggccttaaaattgatcaactaaactagataa 480  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||    
T  12520438 ccaaaaggttttgaggccttaaaattgatcaactaagctagataa 12520482  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 480
Target Start/End: Complemental strand, 33384826 - 33384725
Alignment:
Q  380 tgcttattaaaagcataataaatcaannnnnnn-gaatttaagatttgaatgttggtccaaaaggatttgaggccttaaaattgatcaactaaactagat 478  Q
    ||||| ||||||||||||||||||||        |||| |||||||||||  |||||||||||| |||||| ||||||||||||| || |||| ||||||    
T  33384826 tgcttgttaaaagcataataaatcaaaatttgttgaatctaagatttgaactttggtccaaaagaatttgaagccttaaaattgaccagctaagctagat 33384727  T
Q  479 aa 480  Q
    ||    
T  33384726 aa 33384725  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 405
Target Start/End: Original strand, 24579856 - 24579884
Alignment:
Q  377 caatgcttattaaaagcataataaatcaa 405  Q
    |||||||||||||||||||||||||||||    
T  24579856 caatgcttattaaaagcataataaatcaa 24579884  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 480
Target Start/End: Complemental strand, 15494472 - 15494405
Alignment:
Q  413 gaatttaagatttgaatgttggtccaaaaggatttgaggccttaaaattgatcaactaaactagataa 480  Q
    |||| |||||||||||  ||||| |||||| |||||||||||||||||||| ||||||| ||||||||    
T  15494472 gaatctaagatttgaactttggtgcaaaagaatttgaggccttaaaattgaccaactaagctagataa 15494405  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 13278700 - 13278744
Alignment:
Q  436 ccaaaaggatttgaggccttaaaattgatcaactaaactagataa 480  Q
    |||||||||||||||||||||||||||| |||||| |||||||||    
T  13278700 ccaaaaggatttgaggccttaaaattgaccaactatactagataa 13278744  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 378 - 480
Target Start/End: Original strand, 10237001 - 10237104
Alignment:
Q  378 aatgcttattaaaagcataataaatcaannnnnnn-gaatttaagatttgaatgttggtccaaaaggatttgaggccttaaaattgatcaactaaactag 476  Q
    ||||||||||||||||||||||||||||        |||| |||||||||||  || ||||||||| |||||| ||||||||||||| |||||||  |||    
T  10237001 aatgcttattaaaagcataataaatcaaattttgttgaatctaagatttgaactttagtccaaaagtatttgatgccttaaaattgaccaactaagatag 10237100  T
Q  477 ataa 480  Q
    ||||    
T  10237101 ataa 10237104  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 480
Target Start/End: Original strand, 17095454 - 17095557
Alignment:
Q  378 aatgcttattaaaagcataataaatcaannnnnnn-gaatttaagatttgaatgttggtccaaaaggatttgaggccttaaaattgatcaactaaactag 476  Q
    |||| |||||||||||||||||||||||        |||| |||||||||||  | || ||||||||||||||||| |||||||||| ||||||| |||     
T  17095454 aatgtttattaaaagcataataaatcaagttttgttgaatctaagatttgaacttaggaccaaaaggatttgaggctttaaaattgaccaactaagctaa 17095553  T
Q  477 ataa 480  Q
    ||||    
T  17095554 ataa 17095557  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 405
Target Start/End: Original strand, 43585358 - 43585386
Alignment:
Q  377 caatgcttattaaaagcataataaatcaa 405  Q
    |||||||||||||||||||||||||||||    
T  43585358 caatgcttattaaaagcataataaatcaa 43585386  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 480
Target Start/End: Complemental strand, 13136688 - 13136646
Alignment:
Q  438 aaaaggatttgaggccttaaaattgatcaactaaactagataa 480  Q
    |||||||||||||||||||||||||| ||||||| ||||||||    
T  13136688 aaaaggatttgaggccttaaaattgaccaactaagctagataa 13136646  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 480
Target Start/End: Complemental strand, 9862182 - 9862076
Alignment:
Q  375 tgcaatgcttattaaaagcataataaatcaannnnnnn-gaatttaagatttgaatgttggtccaaaaggatttgaggccttaaaattgatcaactaaac 473  Q
    ||||||||||| |||||||||||||||||||        ||||  ||||||||||  | |  ||||||||||||||||| |||||||||| |||| ||||    
T  9862182 tgcaatgcttagtaaaagcataataaatcaagtttttttgaatccaagatttgaacttagaaccaaaaggatttgaggctttaaaattgaccaaccaaac 9862083  T
Q  474 tagataa 480  Q
    |||||||    
T  9862082 tagataa 9862076  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 480
Target Start/End: Original strand, 13510984 - 13511088
Alignment:
Q  377 caatgcttattaaaagcataataaatcaa-nnnnnnngaatttaagatttgaatgttggtccaaaaggatttgaggccttaaaattgatcaactaaacta 475  Q
    |||||||||||||||||||||||||||||        ||||| || |||||||  |  | ||||||||||||||||| |||||||||| ||  |||||||    
T  13510984 caatgcttattaaaagcataataaatcaagttcttttgaattcaatatttgaacttaagaccaaaaggatttgaggcgttaaaattgaccagataaacta 13511083  T
Q  476 gataa 480  Q
    |||||    
T  13511084 gataa 13511088  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 480
Target Start/End: Original strand, 20345749 - 20345789
Alignment:
Q  440 aaggatttgaggccttaaaattgatcaactaaactagataa 480  Q
    |||||||||| ||||||||||||| |||||||||| |||||    
T  20345749 aaggatttgaagccttaaaattgaccaactaaacttgataa 20345789  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 471
Target Start/End: Original strand, 30869024 - 30869056
Alignment:
Q  439 aaaggatttgaggccttaaaattgatcaactaa 471  Q
    |||||||||||||| ||||||||||||||||||    
T  30869024 aaaggatttgaggctttaaaattgatcaactaa 30869056  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 480
Target Start/End: Complemental strand, 43899062 - 43899018
Alignment:
Q  436 ccaaaaggatttgaggccttaaaattgatcaactaaactagataa 480  Q
    ||||||| |||||| ||||||||||||| |||||||| |||||||    
T  43899062 ccaaaagaatttgaagccttaaaattgaccaactaaattagataa 43899018  T

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