View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17875_low_2 (Length: 443)

Name: NF17875_low_2
Description: NF17875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17875_low_2
NF17875_low_2
[»] chr8 (1 HSPs)
chr8 (16-419)||(34863128-34863531)
[»] chr6 (2 HSPs)
chr6 (357-417)||(28735015-28735076)
chr6 (323-395)||(28735119-28735192)
[»] chr4 (3 HSPs)
chr4 (21-58)||(31965156-31965193)
chr4 (23-67)||(5109972-5110016)
chr4 (29-89)||(10415155-10415215)
[»] chr7 (1 HSPs)
chr7 (22-66)||(26870497-26870541)
[»] chr5 (1 HSPs)
chr5 (21-65)||(5223615-5223659)
[»] chr1 (1 HSPs)
chr1 (22-58)||(30940801-30940837)


Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 34863531 - 34863128
Alignment:
Q  16 cactagtgattgcattcaattaagtcattttttcaaataattatccgtgtcagtgtttggtgtctgtatcagtgtttcatagattgtgatgcatattttg 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34863531 cactagtgattacattcaattaagtcattttttcaaataattatccgtgtcagtgtttggtgtctgtatcagtgtttcatagattgtgatgcatattttg 34863432  T
Q  116 ataattgatgtatgttattgctcgctacagttctcaaggggatttctgatggtttgtcgcgagggaagaaaccggatgaaatggaaaaattggtaaaatt 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34863431 ataattgatgtatattattgctcgctacagttctcaaggggatttctgatggtttgtcgcgagggaagaaaccggatgaaatggaaaaattggtaaaatt 34863332  T
Q  216 ctggttttttgctaatatgaatagatcattagtttactagatattcattttctcttgtgaactattctcatgtaaaaacctcatttgccacaggtaaagg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34863331 ctggttttttgctaatatgaatagatcattagtttactagatattcattttctcttgtgaactattctcatgtaaaaacctcatttgccacaggtaaagg 34863232  T
Q  316 acctatggaaaatgaacatgagacatcaacatgcttctgaagttctgaacaaggatattatatctcattttgttttacgtctcgtgtattgtagaacgta 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34863231 acctatggaaaatgaacatgagacatcaacatgcttctgaagttctgaacaaggatattatatctcattttgttttacgtctcgtgtattgtagaacgta 34863132  T
Q  416 agag 419  Q
    ||||    
T  34863131 agag 34863128  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 28735015 - 28735076
Alignment:
Q  357 gttctgaacaaggatattatatctcatttt-gttttacgtctcgtgtattgtagaacgtaag 417  Q
    ||||||||||||||||||||||| |||||| ||||||||| | |||||||||||||||||||    
T  28735015 gttctgaacaaggatattatatcgcatttttgttttacgtttggtgtattgtagaacgtaag 28735076  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 395
Target Start/End: Original strand, 28735119 - 28735192
Alignment:
Q  323 gaaaatgaacatgagacatcaacatgcttctgaagttctgaacaaggatattatatctcatttt-gttttacgt 395  Q
    |||| ||||||| ||||| || |||||| |||||||||||||||||||||||||||| |||||| |||||||||    
T  28735119 gaaagtgaacataagacaacagcatgctactgaagttctgaacaaggatattatatcgcattttggttttacgt 28735192  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 31965156 - 31965193
Alignment:
Q  21 gtgattgcattcaattaagtcattttttcaaataatta 58  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  31965156 gtgattgcattcaattatgtcattttttcaaataatta 31965193  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 5109972 - 5110016
Alignment:
Q  23 gattgcattcaattaagtcattttttcaaataattatccgtgtca 67  Q
    ||||||||| ||||| |||||||||||||||||||| | ||||||    
T  5109972 gattgcatttaattatgtcattttttcaaataattaccagtgtca 5110016  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 10415155 - 10415215
Alignment:
Q  29 attcaattaagtcattttttcaaataattatccgtgtcagtgtttggtgtctgtatcagtg 89  Q
    ||||||||| | |||||| |||||| || ||| ||||||||||||||||| ||| ||||||    
T  10415155 attcaattatgccattttctcaaattatcatcggtgtcagtgtttggtgtttgtgtcagtg 10415215  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 26870497 - 26870541
Alignment:
Q  22 tgattgcattcaattaagtcattttttcaaataattatccgtgtc 66  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||||    
T  26870497 tgattacattcaattaagtcaatttttcaaataattatcagtgtc 26870541  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 5223659 - 5223615
Alignment:
Q  21 gtgattgcattcaattaagtcattttttcaaataattatccgtgt 65  Q
    ||||||||||||||||| || ||| ||||||||||||||| ||||    
T  5223659 gtgattgcattcaattatgtaattatttcaaataattatcagtgt 5223615  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 30940801 - 30940837
Alignment:
Q  22 tgattgcattcaattaagtcattttttcaaataatta 58  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  30940801 tgattgcattcaattaaatcattttttcaaattatta 30940837  T

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