View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17875_low_3 (Length: 439)
Name: NF17875_low_3
Description: NF17875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17875_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Complemental strand, 28386215 - 28385805
Alignment:
| Q |
13 |
aatattgtttattttaaagtatcccttggcgtcagatcgagtccaaaattgatatccctgtgataaaaatagtttatacatcaacttattggaataagtt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28386215 |
aatattgtttattttaaagtatcccttggcgtcagatcgagtccaaaattgatatccctgtgataaaaatagtttatacatcaacttattggaataaatt |
28386116 |
T |
|
| Q |
113 |
tttcaatgaatatagcttacaacttatatgaaaaacagcttaattactacataccttgctttctctttgccatgatcctgcatctccaggcaaagctaga |
212 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28386115 |
tttcaatgaaaatagcttacaacttatatgaaaaacagcttaattactacataccttgctttctctttgccatgatcctgcatctccaggcaaagctaga |
28386016 |
T |
|
| Q |
213 |
cccacataagcattagtaccctgaaatttccctccttgcaagtacctttagaagcaaggaaatgaaggaacattaaatggatgtttatattgtttaatct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28386015 |
cccacataagcattagtaccctgaaatttccctccttgcaagtacctttagaagcaaggaaatgaaggaacattaaatggatgtttatattgtttaatct |
28385916 |
T |
|
| Q |
313 |
tatgaaattaaagaatataatgtagatagaagtgtaacaaagatattaaaatgtaccaatcttggactagtaatcttccaaatactgctcctctttgatt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28385915 |
tatgaaattaaagaatataatgtagatagaagtgtaacaaagatattaaaatgtaccaatcttggactagtaatcttccaaatactgctcctcgttgatt |
28385816 |
T |
|
| Q |
413 |
aggtggaaaat |
423 |
Q |
| |
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| T |
28385815 |
aggtggaaaat |
28385805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 164 - 421
Target Start/End: Original strand, 28410039 - 28410293
Alignment:
| Q |
164 |
taccttgctttctctttgccatgatcctgcatctccaggcaaagctagacccacataagcatta---gtaccctgaaatttccctccttgcaagtacctt |
260 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | ||||||| |||||||| |
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| T |
28410039 |
taccttgctttctgtttgccatgatcctgcatctccaggcaaagctagacccacataagcattattagtatattgaaatcttcctcctttgaagtaccta |
28410138 |
T |
|
| Q |
261 |
tagaagcaaggaaatgaaggaacat--taaatggatgtttatattgtttaatcttatgaaattaaagaatataatgtagatagaagtgtaacaaagatat |
358 |
Q |
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| T |
28410139 |
gaattgcaaggaaatgaaggaacatattaaatgtatattc-tattgcttgatcttatgaaagtaaaaaataatatcta------agtatgacaa-gatat |
28410230 |
T |
|
| Q |
359 |
taaaatgtaccaatcttggactagtaatcttccaaatactgctcctctttgattaggtggaaa |
421 |
Q |
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| T |
28410231 |
taaaatgtaccaatcttggactagtaatcttccaaatactgctcctctttgattaggtggaaa |
28410293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 164 - 421
Target Start/End: Complemental strand, 28394419 - 28394158
Alignment:
| Q |
164 |
taccttgctttctctttgccatgatcctgcatctccaggcaaagctagacccacataagcattagtaccct---gaaatttccctccttgcaagtacctt |
260 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| || | | || || | ||||||| |||||||| |
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| T |
28394419 |
taccttgctttctctctgccatgatccagcatctccaggcaaagctagacccacataagcattattagcatattgatatcttcctccttcgaagtacctg |
28394320 |
T |
|
| Q |
261 |
tagaagcaaggaaatgaaggaacat--taaatggatgtttatattgtttaatcttatgaaattaaagaatataatgtagatagaagtgtaacaaagatat |
358 |
Q |
| |
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| | || |||||||| ||||| |||||| | |||| ||| || |||||||| || ||||||||| || || || ||| ||||| ||||| |
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| T |
28394319 |
gaacttccagaaaatgaagtaacatattaaatgcagtattatgttgcttgatcttatggaactaaagaataatatctaagtactagtacaacaa-gatat |
28394221 |
T |
|
| Q |
359 |
taaaatgtaccaatcttggactagtaatcttccaaatactgctcctctttgattaggtggaaa |
421 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28394220 |
taaaatgtaccaatcttggactagtaatcttccaaatactgctcccctttgattaggtggaaa |
28394158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 28409556 - 28409610
Alignment:
| Q |
21 |
ttattttaaagtatcccttggcgtcagatcgagtccaaaattgatatccctgtga |
75 |
Q |
| |
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|||||||||||||||| ||||||| || |||||||||||||||||| |||||||| |
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| T |
28409556 |
ttattttaaagtatcctttggcgttagctcgagtccaaaattgatagccctgtga |
28409610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 28394561 - 28394511
Alignment:
| Q |
21 |
ttattttaaagtatcccttggcgtcagatcgagtccaaaattgatatccct |
71 |
Q |
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|||||||||||||||||||||| |||| | |||||||||||||||| |||| |
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| T |
28394561 |
ttattttaaagtatcccttggcatcagtttgagtccaaaattgatagccct |
28394511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 13369184 - 13369134
Alignment:
| Q |
164 |
taccttgctttctctttgccatgatcctgcatctccaggcaaagctagacc |
214 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
13369184 |
taccttgctttctctctgccatgatcctgcatccccaggcaaagctagacc |
13369134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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