View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17875_low_5 (Length: 294)
Name: NF17875_low_5
Description: NF17875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17875_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 34790586 - 34790812
Alignment:
| Q |
19 |
tagtccagtctaagctgcccaagaagctcaagaagaagagaagacaagttgctactgaagatggttcttctaggtatgttactaaatcattgtttgtctt |
118 |
Q |
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| T |
34790586 |
tagtccagtctaagctgcccaagaagctcaagaagaagagaagacaagttgctactgaagatggttcttctaggtatgttactaaatcattgtttctctt |
34790685 |
T |
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| Q |
119 |
tgagtggtttccaagggttagtttatatggccttgtttgcaatttgatcactgctattttctggtatcgttagcattaggaggcttgttgactacgatat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34790686 |
tgagtggtttccaagggttagtttatatggccttgtttacaatttgatcactgctattttctggtatcgttagcattaggaggcttgttgactacgatat |
34790785 |
T |
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| Q |
219 |
tctgtgttaaatttgttaataaaacaa |
245 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
34790786 |
tctgtgttaaatttgttattaaaacaa |
34790812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 2288187 - 2287961
Alignment:
| Q |
19 |
tagtccagtctaagctgcccaagaagctcaagaagaagagaagacaagttgctactgaagatggttcttctaggtatgttactaaatcattgtttgtctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
2288187 |
tagtccagtctaagctgcccaagaagctcaagaaga---gaagacaagtttctactgaagatggttcttctaggtatgtaactaactcattgtttgtctt |
2288091 |
T |
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| Q |
119 |
tgagtggtttccaagggttagtttatatggccttgtttgcaatttgatcactgctattttct-ggtatcgttagcattagg--aggcttgttgactacga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||||||||| ||||||||||||| || |
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| T |
2288090 |
tgagtggtttccaagggttagtttatatggccttgtttgcaatttggtcactgctagtttctgggtatcattagcattaggcttggcttgttgactatga |
2287991 |
T |
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| Q |
216 |
tattctgtgttaaatttgttaataaaacaa |
245 |
Q |
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||| |||||||||||||||||||||||||| |
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| T |
2287990 |
tatcctgtgttaaatttgttaataaaacaa |
2287961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 49275637 - 49275574
Alignment:
| Q |
28 |
ctaagctgcccaagaagctcaagaagaagagaagacaagttgctactgaagatggttcttctag |
91 |
Q |
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|||||||||||||||||| ||||||||||| || || || |||| ||||||||||||||||| |
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| T |
49275637 |
ctaagctgcccaagaagcaacagaagaagagacgaaaacttactaccgaagatggttcttctag |
49275574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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