View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17875_low_6 (Length: 251)
Name: NF17875_low_6
Description: NF17875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17875_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 25269217 - 25268985
Alignment:
| Q |
19 |
gttcaccaccaccgttttcattggctgatataagagcagcaattccaaagcattgttgggtgaaagattcatggaagtcaatgagttatgttttgagaga |
118 |
Q |
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| T |
25269217 |
gttcaccaccaccgttttcattggctgatataagagcagcaattccaaagcattgttgggtgaaagattcatggaagtcaatgagttatgttttgagaga |
25269118 |
T |
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| Q |
119 |
tgttgttattgtttttggtttggctgctgctgctgcnnnnnnnaataattggatggtttggcctctttattgggctgctcaaggaaccatgttttgggct |
218 |
Q |
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| T |
25269117 |
tgttgttattgtttttggtttggctgctgctgctgcttttcttaataattggatggtttggcctctttattgggctgctcaaggaaccatgttttgggct |
25269018 |
T |
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| Q |
219 |
ctttttgttcttggtcatgattggtaaatatca |
251 |
Q |
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| T |
25269017 |
ctttttgttcttggtcatgattggtaaatatca |
25268985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 245
Target Start/End: Original strand, 4704446 - 4704669
Alignment:
| Q |
22 |
caccaccaccgttttcattggctgatataagagcagcaattccaaagcattgttgggtgaaagattcatggaagtcaatgagttatgttttgagagatgt |
121 |
Q |
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| T |
4704446 |
caccaccaccttttacattaggtgatataagagcagctatacctaaacattgttgggttaaggatccttggaaatctatgagctatgttgttagggatgt |
4704545 |
T |
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| Q |
122 |
tgttattgtttttggtttggctgctgctgctgcnnnnnnnaataattggatggtttggcctctttattgggctgctcaaggaaccatgttttgggctctt |
221 |
Q |
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| T |
4704546 |
tgttgtggtttttggtttggctgttgttgctgcttatgttaatagtttgtttgtttggccactttattgggctgctcaaggaaccatgttttgggctctc |
4704645 |
T |
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| Q |
222 |
tttgttcttggtcatgattggtaa |
245 |
Q |
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| T |
4704646 |
tttgttcttggtcatgattggtaa |
4704669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 25840877 - 25840828
Alignment:
| Q |
196 |
ctcaaggaaccatgttttgggctctttttgttcttggtcatgattggtaa |
245 |
Q |
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| T |
25840877 |
ctcaagggacaatgttttgggctctttttgttcttggacatgattggtaa |
25840828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 30187008 - 30186938
Alignment:
| Q |
175 |
tttggcctctttattgggctgctcaaggaaccatgttttgggctctttttgttcttggtcatgattggtaa |
245 |
Q |
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| T |
30187008 |
tttggccaatttattggcctcttcaaggaacaatgttttgggcaatttttgttcttggacatgattggtaa |
30186938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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