View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17875_low_7 (Length: 251)
Name: NF17875_low_7
Description: NF17875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17875_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 8119445 - 8119228
Alignment:
| Q |
16 |
atgtgatagtataatctactgcatttgcacaagtgaaagtgctggtcttatcatcatatgcatagctatatgcacgtgggcaagcgttcttaaacaattg |
115 |
Q |
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| T |
8119445 |
atgtgatagtataatctactgcatttgcacaagtgaaagtgctggtcttatcatcatatgcatagctatatgcacgtgggcaagcgttcttaaacaattg |
8119346 |
T |
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| Q |
116 |
agaataagtagaaggtttgcaagtgtctggtgtcccatatgcgccgctgcagcaatactccggtgaattaaaagcttcgcacgcgcttttacacgcgacg |
215 |
Q |
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| T |
8119345 |
agaataagtagaaggtttgcaagtgtctggtgtcccatacgcgccgctgcagcaatactccggtgaattaaaagcttcgcacgcgcttttacacgcgaca |
8119246 |
T |
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| Q |
216 |
ccgtctttcccatccaca |
233 |
Q |
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|||||||||||||||||| |
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| T |
8119245 |
ccgtctttcccatccaca |
8119228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 27388704 - 27388744
Alignment:
| Q |
45 |
caagtgaaagtgctggtcttatcatcatatgcatagctata |
85 |
Q |
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| T |
27388704 |
caagtgaaagtgctgctcttatcatcgtaagcatagctata |
27388744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 174
Target Start/End: Complemental strand, 53178141 - 53178009
Alignment:
| Q |
42 |
gcacaagtgaaagtgctggtcttatcatcatatgcatagctatatgcacgtgggcaagcgttcttaaacaattgagaataagtagaaggtttgcaagtgt |
141 |
Q |
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| T |
53178141 |
gcacatgtgaacgtgcttgtcttatcgtcgtacgcgtagctatacgcgcgtgggcaagcacttttaaataactcagaataactcgaaggtttgcaagtgt |
53178042 |
T |
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| Q |
142 |
ctggtgtcccatatgcgccgctgcagcaatact |
174 |
Q |
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| T |
53178041 |
tgggtgaaccatacgcgccgctgcaacaatact |
53178009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 28443218 - 28443177
Alignment:
| Q |
44 |
acaagtgaaagtgctggtcttatcatcatatgcatagctata |
85 |
Q |
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| T |
28443218 |
acaagtgaacgtgctggtcttatcatcataggtatagctata |
28443177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 27988143 - 27988191
Alignment:
| Q |
52 |
aagtgctggtcttatcatcatatgcatagctatatgcacgtgggcaagc |
100 |
Q |
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| T |
27988143 |
aagtactggtcttatcatcatacgcgtagctataagcgcgtgggcaagc |
27988191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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