View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_high_1 (Length: 763)
Name: NF17876_high_1
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 19 - 748
Target Start/End: Complemental strand, 2656187 - 2655492
Alignment:
| Q |
19 |
taatacacttataacttggattatagtgttagaattttgttactttatcttgattattgtaaaaccatattttgcagcagcaggttggagaatgtggtga |
118 |
Q |
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| T |
2656187 |
taatacacttataacttggattataatgttagaattttgttattttatcttgattattgtaaaatcatattttgcagcagcaggttgtagaatgtggtga |
2656088 |
T |
|
| Q |
119 |
ttcgtgcagcgacacaaacatggtccatactcctgttggtaagtcttttatgaaaagatcatctggtgatatggattctgttacaaatggaagtggcgag |
218 |
Q |
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| T |
2656087 |
tt----------------------ccatactcctgttggtaagtcttctatgaaaagatcatccggtgatatggattctgttacaaatggaagtggcgag |
2656010 |
T |
|
| Q |
219 |
gttggacaagcatctctcacacagccgtcgaagatggtgcatgcgcgtgaaaattgaacccaaagattaaagctgacgtaataatcgttgacgaggatca |
318 |
Q |
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| T |
2656009 |
gttggacaagcatctgtcacacagccgtcaaagatggtgct----cgtgaaaattgaacccaaagattaaagctgacgtaataatcgttgacgaggatca |
2655914 |
T |
|
| Q |
319 |
tctgtttgatgnnnnnnnaatgatgttacctctttgtctacattttctttgtcgttaaaaatcagatggcagattatgttctgttcatctattatgcaat |
418 |
Q |
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| T |
2655913 |
tatgtttgatgtttttttaatgatgttacctgtttatctacattttctttgtcgttaataatcagatggcagattatgttctgttcatctattatacaat |
2655814 |
T |
|
| Q |
419 |
tagtcatttgatttcaagactttg-nnnnnnncaattgctatttcctataatctaatattacgaatccataataaaagtcattgacatgttttcgtatta |
517 |
Q |
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| T |
2655813 |
tagtcatttgatttcaagactttgtttttcttcaattgctatttgctataatctaatattacgaatccataataaaagtcattgacatgttttcgtatta |
2655714 |
T |
|
| Q |
518 |
ttttccttcgcggctgataataatttggttcatttgattgattagtctaaaccacaatt-agtcattttgattgatcactgattccaataaggcaactct |
616 |
Q |
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| T |
2655713 |
ttttccttcgctgctaataataatttggttcatttgattgattagtctaaaccacaattcaggccat----------agtgattccaataaggcaactct |
2655624 |
T |
|
| Q |
617 |
tttaatttataatcacaaattgaaatctccaaatgcagttttacatagcaaaattatttctgcatcaatgtcattctgttttaacgaagcaaacttaatt |
716 |
Q |
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| T |
2655623 |
tttaatttataatcacaaattgaaatctccaaatgcagttttacatagcaaaattgtttctgcatcaatgtcattctgtcttaacgaagcaaacttaatt |
2655524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 99 - 258
Target Start/End: Complemental strand, 47764633 - 47764474
Alignment:
| Q |
99 |
caggttggagaatgtggtgattcgtgcagcgacacaaacatggtccatactcctgttggtaagtcttttatgaaaagatcatctggtgatatggattctg |
198 |
Q |
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||||||| ||||||||| |||||||| |||||||||||||| ||||| ||||||||||| || |||| ||||||||||||||| ||| |||| |||||| |
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| T |
47764633 |
caggttgtagaatgtggcgattcgtgtagcgacacaaacattgtccacactcctgttggcaaatcttctatgaaaagatcatccggtaatatagattctt |
47764534 |
T |
|
| Q |
199 |
ttacaaatggaagtggcgaggttggacaagcatctctcacacagccgtcgaagatggtgc |
258 |
Q |
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| T |
47764533 |
caacgaatggaaatggcgaggttggacaagcatctgtgacacagccctcgaagatggtgc |
47764474 |
T |
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