View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17876_high_10 (Length: 333)

Name: NF17876_high_10
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17876_high_10
NF17876_high_10
[»] chr7 (6 HSPs)
chr7 (13-143)||(23065104-23065232)
chr7 (235-316)||(23063833-23063914)
chr7 (235-316)||(23080495-23080576)
chr7 (235-316)||(23091383-23091464)
chr7 (235-304)||(23056638-23056707)
chr7 (237-313)||(23035032-23035108)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 23065232 - 23065104
Alignment:
Q  13 aaaattatcttgcaaataaaagtcatgaaatatcttttcgaataatgtcatgtctcaacgcaaacactagagctagcagttgtaatatacttgnnnnnnn 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||           
T  23065232 aaaattatcttgcaaataaaagtcatgaaatatcttttcgaatcatgtcatgtctcaacgcaaacactagagctagcagttgtaatatacttg--ttttt 23065135  T
Q  113 nncgtatatttatgtccttgtcatatgcaac 143  Q
      |||||||||||||||||||||||||||||    
T  23065134 ttcgtatatttatgtccttgtcatatgcaac 23065104  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 23063914 - 23063833
Alignment:
Q  235 cttactagaatattgagttttccatcaaagatcgaagcaacagtttccatcaacttttcacgttggtcacgaaataataaat 316  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||    
T  23063914 cttactagaatattgagttttccatcaaagatcgaagcaacggtttccatcaacttttgacgttggtcatgaaataataaat 23063833  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 23080576 - 23080495
Alignment:
Q  235 cttactagaatattgagttttccatcaaagatcgaagcaacagtttccatcaacttttcacgttggtcacgaaataataaat 316  Q
    ||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  23080576 cttacaagaatattgagttttccatcaaagaccaaagcaacagtttccatcaacttttgacgttggtcatgaaataataaat 23080495  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 23091464 - 23091383
Alignment:
Q  235 cttactagaatattgagttttccatcaaagatcgaagcaacagtttccatcaacttttcacgttggtcacgaaataataaat 316  Q
    ||||||||||||||||||||||| | |||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  23091464 cttactagaatattgagttttccttgaaaggttgaagcaacagtttccatcaatttttcacgttgttcacgaaataataaat 23091383  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 23056707 - 23056638
Alignment:
Q  235 cttactagaatattgagttttccatcaaagatcgaagcaacagtttccatcaacttttcacgttggtcac 304  Q
    ||||||||||||||||||||||| | |||||| ||||||||| ||||||| |  |||| |||||||||||    
T  23056707 cttactagaatattgagttttccttgaaagattgaagcaacattttccattagattttgacgttggtcac 23056638  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 23035108 - 23035032
Alignment:
Q  237 tactagaatattgagttttccatcaaagatcgaagcaacagtttccatcaacttttcacgttggtcacgaaataata 313  Q
    ||||||||||||||| ||||||| |||||| |||| |||||||||||| ||  |||  ||||| ||| |||||||||    
T  23035108 tactagaatattgagctttccatgaaagatagaagaaacagtttccattaatcttttgcgttgttcatgaaataata 23035032  T

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