View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_high_11 (Length: 326)
Name: NF17876_high_11
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 379229 - 379524
Alignment:
| Q |
11 |
cacagatctggattgtaatgtgttgtggtgtttcatttcgttcgaactcacgaccacttgatacatagagcttttagtttccattgcgacacatatgaaa |
110 |
Q |
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| T |
379229 |
cacagatttggattataatgtgttgtggtggttcattccgttcgaactcacgaccacttgatacatagcgcttttagtttccattgcgacacatatgaaa |
379328 |
T |
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| Q |
111 |
agcctgattaagtatgattgatacaatattaataccatatttagggggagccatggctaccatggactcctaagaagatctgcccctgatctggaccacc |
210 |
Q |
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| T |
379329 |
agcctcattaagtatgcatgatacaatattaataccatatttggggggagccatggttaccatggactcctaagaagatttgcccctgatctggaccacc |
379428 |
T |
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| Q |
211 |
ttagttgaatgagcttgaaccccaccagcaccatgtggcggcggaggaggcgacggatgtcatgatgatgagtcgttgtggtctaggaggaggagc |
306 |
Q |
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| T |
379429 |
ttagttgaatgagcttgaaccccaccagcaccatgtggaggcggaggaggcgacggatgtcatgatgatgagtcgttgtggtctaggaggaggagc |
379524 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 10574315 - 10574361
Alignment:
| Q |
152 |
tagggggagccatggctaccatggactcctaagaagatctgcccctg |
198 |
Q |
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| T |
10574315 |
tagggggagccatggctaccatgggctcccaagaagatccgcccctg |
10574361 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 42148764 - 42148821
Alignment:
| Q |
135 |
aatattaataccatatttagggggagccatggctaccatggactcctaagaagatctg |
192 |
Q |
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| T |
42148764 |
aatataaatacgaaatttggggggagccatggctaccatgggctcttaagaagatctg |
42148821 |
T |
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