View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17876_high_12 (Length: 321)
Name: NF17876_high_12
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 46793516 - 46793219
Alignment:
| Q |
1 |
cgcaatagcattgaagagcaatgttgaacacattttctttcatgaaaatgtcgttttataaagaattgttcctccaaattctgttgattttctctttgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46793516 |
cgcaatagcattgaagagcaatgttgaacacattttctttcatgaaaatgtcgttttacaaagaattgttcctccaaattctgttgattttctctttgat |
46793417 |
T |
|
| Q |
101 |
tgctcttagttcccaaactcgttatcaaacaaagagtcattataattttgttgtgagtcctatcagttcgtgagaattacttaatactctatagcattac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
46793416 |
tgctcttagttcccaaactcgttatcaaacaaagagtcattataattttgttgtgagtcctatcaattcgtgagaattacttaataccctatagcattac |
46793317 |
T |
|
| Q |
201 |
tagtaaaacattatgtagcatagtagcttccctcaaataaaaatgtagcatagcatgccataaccttaattttcattttttaaaatgtttccgcaaac |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
46793316 |
tagtaaaacattatgtagcatagtagcttccctcaaataaaaatgtagcatagcatgcaataaccctaattttcattttttaaaatatttccgcaaac |
46793219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 46785121 - 46785037
Alignment:
| Q |
34 |
tttctttcatgaaaatgtcgttttataaagaattgttcctccaaattctgttgattttctctttgattgctcttagttcccaaactcg |
121 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||| | ||||||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
46785121 |
tttctttcatgaaaatgtcgttttacaaagaattgt---tccaaactttgttgatttattctttcattactcttagttcccaaactcg |
46785037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 22120150 - 22120101
Alignment:
| Q |
255 |
atgccataaccttaattttcattttttaaaatgtttccgcaaactaaagt |
304 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22120150 |
atgccataaccctaattttcattttttaaaatgtttccgaaaactaaagt |
22120101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University