View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_high_27 (Length: 226)
Name: NF17876_high_27
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_high_27 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 29848859 - 29848638
Alignment:
| Q |
7 |
tgctgacctctgagataagctcccacattccgattatgagtttcgaaggccgttgattgatcaagttaagtcaacaactcttccagaaagtaagagccct |
106 |
Q |
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| T |
29848859 |
tgctgacctctacgagaagctcccacattccggttatgagttttgaaggcagttgattgatcaagttaagtccacaactccgccaaaaagcaagagccct |
29848760 |
T |
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| Q |
107 |
gcgcagttttcagctgcaatgaaagtttgtatgattctgaacttccccaagagttgattgagctcctccaaaatgctggacaattctgctttttgt--aa |
204 |
Q |
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| T |
29848759 |
gtgcagttttccactgcaatgaaagtttgtatgattccgaacttgcccaagagttgattgagctcctccaaaatgctgtacaattctgcttttggttgaa |
29848660 |
T |
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| Q |
205 |
acttcaatctgtcatttttgct |
226 |
Q |
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|||||||||||||||||||||| |
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| T |
29848659 |
acttcaatctgtcatttttgct |
29848638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 29868542 - 29868321
Alignment:
| Q |
7 |
tgctgacctctgagataagctcccacattccgattatgagtttcgaaggccgttgattgatcaagttaagtcaacaactcttccagaaagtaagagccct |
106 |
Q |
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|||||||||||| | |||||||||||||| ||||| |||||| |||||| |||| |||||||||||||| | ||||| | ||| |||| ||||||||| |
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| T |
29868542 |
tgctgacctctgcaagaagctcccacattctgattaagagttttgaaggcagttggttgatcaagttaagcccacaacgccgccaaaaagcaagagccct |
29868443 |
T |
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| Q |
107 |
gcgcagttttcagctgcaatgaaagtttgtatgattctgaacttccccaagagttgattgagctcctccaaaatgctggacaattctgctttttgt--aa |
204 |
Q |
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| T |
29868442 |
gtgcagttttccgctgcaatgaaagtttgtatgattctgaacttccccaagagttgattgaggtcctccaaaatgctgcacaattctgcttttagttgaa |
29868343 |
T |
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| Q |
205 |
acttcaatctgtcatttttgct |
226 |
Q |
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|||||||||||||||||||||| |
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| T |
29868342 |
acttcaatctgtcatttttgct |
29868321 |
T |
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