View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_high_29 (Length: 205)
Name: NF17876_high_29
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 47 - 189
Target Start/End: Complemental strand, 41076384 - 41076242
Alignment:
| Q |
47 |
ttatttgtaacaaatatttttgacattattttaaattataacatcatagcttcatttgcacttacaatagatcaaaataatgatactcctataaaccaat |
146 |
Q |
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| T |
41076384 |
ttatttgtaacaaatatttttgacattattttaaattataacatcatagcttcatttgcacttacaatagatcaaaataatgatactcctataaaccaat |
41076285 |
T |
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| Q |
147 |
ataccatgagaaatatgtagtataaaaaatattgggttgtgtc |
189 |
Q |
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| T |
41076284 |
ataccatgagaaatatgtagtataaaaaatattgggttgtgtc |
41076242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 41089785 - 41089737
Alignment:
| Q |
46 |
tttatttgtaacaaatatttttgacattattttaaattataacatcata |
94 |
Q |
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| T |
41089785 |
tttatttgtgataaagatttttgacattattttaaattataacatcata |
41089737 |
T |
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