View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_high_5 (Length: 472)
Name: NF17876_high_5
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 34478096 - 34477633
Alignment:
| Q |
1 |
aaagaagctaaacctttgttctcagaaacctcatctttaccaacattttcagtaacaggaccctccaccaccttttccttctcactctccaaaaccaatg |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34478096 |
aaagaagctaaacctttgtcctcagaaacctcatctttaccaacattttcagtaacaggaccctccaccaccttttccttctcactctccaaaaccaatg |
34477997 |
T |
|
| Q |
101 |
aacgtggtgacgacaacctaccaatagaatcaccattggaagctccaaagttatgcaaagttggattgaacaagcccaaatcatcatactctgatgaata |
200 |
Q |
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| T |
34477996 |
aacgtggtgatgacaacctaccagtagaatcaccattggaagctccaaagttattcaaagttggattgaacaagcccaaatcatcatactctgatgaata |
34477897 |
T |
|
| Q |
201 |
aattttgtcataaaaagagtaatccatagttctgaaacttcgtagtgtgatcaatgatggtactactactacttgagaaagagaagaagaaaaccgggtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34477896 |
aattttgtcataaaaagagtaatccatagttctgaaacttcgtagtgtgatcaatgatggtactactactacttgagaaagagaagaagaaaaccgggtg |
34477797 |
T |
|
| Q |
301 |
gacgagttgttggggcgaaccaaaatgaaagcttttgagaatggatgttgttttgtttgttgataatgttgttggtcataatttccattaagcaaaggga |
400 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34477796 |
gacgagttgtcggggcgaaccaaaatgaaagcttttgagaatggatgttgttttgtttgttgataatgttgttggtcataatttccattaagcaaaggga |
34477697 |
T |
|
| Q |
401 |
agaagaacgtttgaaaggggttaaaggggaagtagattaatgtgaaaacatccacatattcttc |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34477696 |
agaagaacgtttgaaaggggttaaaggggaagtagattaatgtgaaaacatccacattttcttc |
34477633 |
T |
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