View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_high_7 (Length: 369)
Name: NF17876_high_7
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 9297152 - 9296956
Alignment:
| Q |
18 |
actcatccaataacaatttgtgcattgatgctgaaaatcaatctttgaatgctgtataatgcaattgattgatgctcccttaatgtgtttcttgaattta |
117 |
Q |
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| T |
9297152 |
actcacccattaacaatttatgcattgatgccgaaaatcaatctttgaatactgtataatgcaattgattgatgctcccttgatgtgttt-ttgaattta |
9297054 |
T |
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| Q |
118 |
attatacaaaaactaagtaacctattgcattagtaatggtggagagcaggatatctctaacttgagagctcagttgggagagaagtattgaggaccaa |
215 |
Q |
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| T |
9297053 |
tttatacaaaaactaagtaacctattgcattagtaatggtggagagcaagatatctctaacttgagggctcagttgggagagaagtattgaggaccaa |
9296956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 9296960 - 9296872
Alignment:
| Q |
260 |
accaatcctacaaaaaatcatgattattttgaaattgaaattgaaattgaagttcttgacatattgattacacccttgaaatcaaattttaatat |
354 |
Q |
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| T |
9296960 |
accaatcctacaaaaaatcatgattattttgaaattgaaattgaaa------ttcttgacatattgattaaacccttcaaataaaattttaatat |
9296872 |
T |
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