View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_low_10 (Length: 333)
Name: NF17876_low_10
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 23065232 - 23065104
Alignment:
| Q |
13 |
aaaattatcttgcaaataaaagtcatgaaatatcttttcgaataatgtcatgtctcaacgcaaacactagagctagcagttgtaatatacttgnnnnnnn |
112 |
Q |
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| T |
23065232 |
aaaattatcttgcaaataaaagtcatgaaatatcttttcgaatcatgtcatgtctcaacgcaaacactagagctagcagttgtaatatacttg--ttttt |
23065135 |
T |
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| Q |
113 |
nncgtatatttatgtccttgtcatatgcaac |
143 |
Q |
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| T |
23065134 |
ttcgtatatttatgtccttgtcatatgcaac |
23065104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 23063914 - 23063833
Alignment:
| Q |
235 |
cttactagaatattgagttttccatcaaagatcgaagcaacagtttccatcaacttttcacgttggtcacgaaataataaat |
316 |
Q |
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| T |
23063914 |
cttactagaatattgagttttccatcaaagatcgaagcaacggtttccatcaacttttgacgttggtcatgaaataataaat |
23063833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 23080576 - 23080495
Alignment:
| Q |
235 |
cttactagaatattgagttttccatcaaagatcgaagcaacagtttccatcaacttttcacgttggtcacgaaataataaat |
316 |
Q |
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| T |
23080576 |
cttacaagaatattgagttttccatcaaagaccaaagcaacagtttccatcaacttttgacgttggtcatgaaataataaat |
23080495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 23091464 - 23091383
Alignment:
| Q |
235 |
cttactagaatattgagttttccatcaaagatcgaagcaacagtttccatcaacttttcacgttggtcacgaaataataaat |
316 |
Q |
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| T |
23091464 |
cttactagaatattgagttttccttgaaaggttgaagcaacagtttccatcaatttttcacgttgttcacgaaataataaat |
23091383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 23056707 - 23056638
Alignment:
| Q |
235 |
cttactagaatattgagttttccatcaaagatcgaagcaacagtttccatcaacttttcacgttggtcac |
304 |
Q |
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| T |
23056707 |
cttactagaatattgagttttccttgaaagattgaagcaacattttccattagattttgacgttggtcac |
23056638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 23035108 - 23035032
Alignment:
| Q |
237 |
tactagaatattgagttttccatcaaagatcgaagcaacagtttccatcaacttttcacgttggtcacgaaataata |
313 |
Q |
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||||||||||||||| ||||||| |||||| |||| |||||||||||| || ||| ||||| ||| ||||||||| |
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| T |
23035108 |
tactagaatattgagctttccatgaaagatagaagaaacagtttccattaatcttttgcgttgttcatgaaataata |
23035032 |
T |
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