View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_low_15 (Length: 286)
Name: NF17876_low_15
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_low_15 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 17644692 - 17644968
Alignment:
| Q |
10 |
agatgaattcaagagtttaattaagaacattacaggaaatgaatcaaatgcatcaaggcaaccggttccggttcagttttcgcctccagtaccaagacat |
109 |
Q |
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| T |
17644692 |
agatgaattcaagagtttaattaagaacattacaggaaatgaatcaaatgcatcaaggcaaccagttccggttcagttttcgcctccagtaccaagacat |
17644791 |
T |
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| Q |
110 |
catgtgcatcctatttatggtcctcttcttgttaacaattcacaaagtaatctttctgggtttccagtagctacttccatgagacactttcaagactcaa |
209 |
Q |
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| T |
17644792 |
catgtgcatcctatttctggtcctctccttgttaacaattcacaaagtaatctttctgggtttccagtatctacttccatgagaaactttcaagactcaa |
17644891 |
T |
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| Q |
210 |
cgccgctgaacattggtaattcaagaggtaaccagttccaaccttaccctcctcaattacaagccttgaacaataca |
286 |
Q |
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| T |
17644892 |
cgccgctgaacattggtaattcaagaggtaaccagttccaaccttaccctcctcaatcacaagccttgaacaataca |
17644968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 106 - 284
Target Start/End: Original strand, 17631290 - 17631468
Alignment:
| Q |
106 |
acatcatgtgcatcctatttatggtcctcttcttgttaacaattcacaaagtaatctttctgggtttccagtagctacttccatgagacactttcaagac |
205 |
Q |
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| T |
17631290 |
acatcctgtgcagcctattactggtaatcctcttgttgacaatccacggagtaatcttgttgagtttccaatatctgcttcgatgagaaactctcaagac |
17631389 |
T |
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| Q |
206 |
tcaacgccgctgaacattggtaattcaagaggtaaccagttccaaccttaccctcctcaattacaagccttgaacaata |
284 |
Q |
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| T |
17631390 |
ttattgccgctaaacattggtaattcaggaggtaatcagtttcaatcttaccctaatcaatcacaagtcttcaacaata |
17631468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 284
Target Start/End: Original strand, 17604737 - 17604885
Alignment:
| Q |
136 |
tcttgttaacaattcacaaagtaatctttctgggtttccagtagctacttccatgagacactttcaagactcaacgccgctgaacattggtaattcaaga |
235 |
Q |
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| T |
17604737 |
tcttgttgaaaattcacaaagtaatattgttgagtttccaatatcttctttgatgagaaactctcaagacctatttccgctgaacattggtaattcagga |
17604836 |
T |
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| Q |
236 |
ggtaaccagttccaaccttaccctcctcaattacaagccttgaacaata |
284 |
Q |
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| T |
17604837 |
ggtaatcagtttcagccttaccctcatcaatcacaagtcttcaacaata |
17604885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 17631164 - 17631251
Alignment:
| Q |
10 |
agatgaattcaagagtttaattaagaacattacaggaaatgaatcaaatgcatcaaggcaaccggttccggttcagttttcgcctcca |
97 |
Q |
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| T |
17631164 |
agatgaattcaagagttttgttcagcacattacgggaaataaatcaaatgcattaaggccaccagatccagttcaggtttcggctcca |
17631251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 29883364 - 29883431
Alignment:
| Q |
216 |
tgaacattggtaattcaagaggtaaccagttccaaccttaccctcctcaattacaagccttgaacaat |
283 |
Q |
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| T |
29883364 |
tgaactttgatagttcaagaggtaaccagtttcaaccttaccctactcaatcacaagtattgaacaat |
29883431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 16481382 - 16481317
Alignment:
| Q |
217 |
gaacattggtaattcaagaggtaaccagttccaaccttaccctcctcaattacaagccttgaacaa |
282 |
Q |
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| T |
16481382 |
gaacattggtaattcaggaggtaatcagtttcaaccttatcctcatcaatcacaagtcttcaacaa |
16481317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 29880391 - 29880324
Alignment:
| Q |
216 |
tgaacattggtaattcaagaggtaaccagttccaaccttaccctcctcaattacaagccttgaacaat |
283 |
Q |
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| T |
29880391 |
tgaactttgataattcaagaggtaaccaatttcagtcttaccctcctcaatcacaagtattgaacaat |
29880324 |
T |
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