View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_low_17 (Length: 269)
Name: NF17876_low_17
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 97 - 261
Target Start/End: Original strand, 15729143 - 15729307
Alignment:
| Q |
97 |
tgagttaatttgggatttataacaacaaccttaacaagggaagaagaacacaaaaaattatgagcaatttggtgttgtgagcaatttgggatcaaatctc |
196 |
Q |
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| T |
15729143 |
tgagttaatttgggatttataatagcgaccttaacaagggaagaagaacacaaaaaattatgaacaatttgctgctgtgagcaatttgggataaaatctc |
15729242 |
T |
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| Q |
197 |
tttgattttaccattgttcgaaaaaccccatgaaaccacaccttctagctctaattcttcatctc |
261 |
Q |
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| T |
15729243 |
tttgattttaccattgttcgaaaaaccccatggaaccacacctgctagctctaattcttcatctc |
15729307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 261
Target Start/End: Original strand, 11344916 - 11345061
Alignment:
| Q |
97 |
tgagttaatttgggatttataacaacaaccttaacaagggaagaagaacacaaaaaattatgagcaatttggtgttgtgagcaatttgggatcaaatctc |
196 |
Q |
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||||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |
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| T |
11344916 |
tgagttaatttaggatttataacagcgaccttaacaagggaagaagaccacaaaaaattatgagcaatttg-----------------ggat-aaatctc |
11344997 |
T |
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| Q |
197 |
tttgattttaccattgttcgaaaaaccccatgaaaccacaccttctagctctaattcttcatctc |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
11344998 |
tttgattttaccattgttcgaaaaaccccatgaaaccacacctgctagctct-attcttcatctc |
11345061 |
T |
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