View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_low_2 (Length: 735)
Name: NF17876_low_2
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 620; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 84 - 719
Target Start/End: Original strand, 39267423 - 39268058
Alignment:
| Q |
84 |
atacaaatatcaaatgtgaagttccatgagagatatttgatgaaagcatgaaggaagtgtgaggctctagtattgcaatgcagcgtctgaaactcacaac |
183 |
Q |
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| T |
39267423 |
atacaaatatcaaatgtgaagttccatgagagatatttgatgaaagcatgaaggaagtgtgaggctctagtattgcaatgcagcgtctgaaactcacaac |
39267522 |
T |
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| Q |
184 |
gttgagactctcacccttacatttctctctcacttccttcaaacctataagatctttctcttcttcaaccatttctccctggtctggtctccattcatgg |
283 |
Q |
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| T |
39267523 |
gttgagactctcacccttacatttctctctcacttccttcaaacctataagatgtttctcttcttcaaccatttctccctggtctggtctccattcatgg |
39267622 |
T |
|
| Q |
284 |
cgaaacagtcctctcaaccaaaatcgcaagtggggtccactttctcctcaacccgaacctattctctatgattctccattcggagaagcttcttcattag |
383 |
Q |
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| T |
39267623 |
cgaaacagtcctctcaaccaaaatcgcaagtggggtccactttctcctcaacccgaacctaatctccatgattctccattcggagaagcttcttcattgg |
39267722 |
T |
|
| Q |
384 |
ctgagtttggttctattgttctttccaccactgaccctcttgaaaagtctcgtctctcccatattgctttctccctctggctccgcggtgatcttcctct |
483 |
Q |
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| T |
39267723 |
ctgagtttggttctattgttctttccaccactgaccctcttgaaaagtctcgtctctcccatattgctttctccctctggctccgcggtgatcttcctct |
39267822 |
T |
|
| Q |
484 |
tggtcagtcagaccctccttctcgaccagcccgacccgataagcctgaactggtttgttcactcttctgcacaccacgtgtttgttttaatttttgataa |
583 |
Q |
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| T |
39267823 |
tggtcagtcagaccctccttctcgaccagcccgacccgataagcctgaactggtttgttcactcttctgcacaccacgtgtttgttttaatttttgataa |
39267922 |
T |
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| Q |
584 |
cccattagatgcatgatttgcctaagatacagataactatggtaagatgcataatgaattggttttctttgatttcaggtttctactaaggaaattcctg |
683 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39267923 |
cccattagatgcatgatttgcctaagatacagataactatggtaagatgcataatgaattggttttctttgatttcaggtttctactaaggaaattcctg |
39268022 |
T |
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| Q |
684 |
ctcctaaaaactcgggtttgcctttgaatgcttatt |
719 |
Q |
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| T |
39268023 |
ctcctaaaaactcgggtttgcctttgaatgcttatt |
39268058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 39267352 - 39267405
Alignment:
| Q |
35 |
taaaaagtatgtcaccttaagtgttatcctcatctaaacaaatgtaataataca |
88 |
Q |
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| T |
39267352 |
taaaaagtatgtcaccttaagtgttatcctcatctaaacaaatgtaataataca |
39267405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 388 - 429
Target Start/End: Original strand, 39267185 - 39267226
Alignment:
| Q |
388 |
gtttggttctattgttctttccaccactgaccctcttgaaaa |
429 |
Q |
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| T |
39267185 |
gtttggttctatcgttctttccaccactgaccctcttgaaaa |
39267226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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