View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_low_21 (Length: 261)
Name: NF17876_low_21
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 9679917 - 9680154
Alignment:
| Q |
16 |
ccgatcattatcaacgatcaagatgattgactacattgatggctggctgcataaaagtaataaatattcatagtaattttcttaatacctttcccatgtt |
115 |
Q |
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| T |
9679917 |
ccgatcattatcaacgatcaagatgattgactacattgatggctggctgcataaaagtaataataattcatagtaattttcttaatacctttcccatgtt |
9680016 |
T |
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| Q |
116 |
ggataacaaaggtaggttataaccactgatttttgcaacaaagttctggtccaataaaacatcagtaattttgatattgtttgaatatacaccaggaaca |
215 |
Q |
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| T |
9680017 |
ggataacaaaggcatgttataaccactgattttcgcaacaaagttttggtccaataaaacatctgtgattttgatattgtttgaatatacaccaggaaca |
9680116 |
T |
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| Q |
216 |
atctctgtatgcaaaaattggattccctttgctactcc |
253 |
Q |
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| T |
9680117 |
atctctgtatgcaaaaattggattccctttgccactcc |
9680154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 100 - 253
Target Start/End: Complemental strand, 33546770 - 33546617
Alignment:
| Q |
100 |
atacctttcccatgttggataacaaaggtaggttataaccactgatttttgcaacaaagttctggtccaataaaacatcagtaattttgatattgtttga |
199 |
Q |
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| T |
33546770 |
atacctttcctatgttagataacaaaggtagattataactgctaatttttgcaacaagattgtgatccaataaaatatcttctattttgatattgttgga |
33546671 |
T |
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| Q |
200 |
atatacaccaggaacaatctctgtatgcaaaaattggattccctttgctactcc |
253 |
Q |
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| T |
33546670 |
atatacaccagggacaattcctgtatgcaaaaattggattccctttgctactcc |
33546617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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