View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_low_22 (Length: 255)
Name: NF17876_low_22
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_low_22 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 44631194 - 44630968
Alignment:
| Q |
19 |
cctccttcgtcctctgctgctctgaaaccccgcagaagaag---cccagttcttcgatctatgttatcaagtggtgagtctgttcgttagttatgttgat |
115 |
Q |
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| T |
44631194 |
cctccttcgtcctctgctgctctgaaaccccgcagaagaagaagctcagttcttcaatc---------aagtggtgagtctgttggtta----tgttgat |
44631108 |
T |
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| Q |
116 |
tcactattcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatct |
215 |
Q |
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| T |
44631107 |
tcactattcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatct |
44631008 |
T |
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| Q |
216 |
atgattcatttttcctttctctacttttctatcagatttt |
255 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |
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| T |
44631007 |
atgattaatttttcctttctctacttttctatcagatttt |
44630968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 44798174 - 44797948
Alignment:
| Q |
19 |
cctccttcgtcctctgctgctctgaaaccccgcagaagaag---cccagttcttcgatctatgttatcaagtggtgagtctgttcgttagttatgttgat |
115 |
Q |
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| T |
44798174 |
cctccttcgtcctctgctgctctgaaaccccgcagaagaagaagctcagttcttcaatc---------aagtggtgagtctgttggtta----tgttgat |
44798088 |
T |
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| Q |
116 |
tcactattcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatct |
215 |
Q |
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| T |
44798087 |
tcactattcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatct |
44797988 |
T |
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| Q |
216 |
atgattcatttttcctttctctacttttctatcagatttt |
255 |
Q |
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| T |
44797987 |
atgattaatttttcctttctctacttttctatcagatttt |
44797948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 83 - 255
Target Start/End: Original strand, 35161998 - 35162166
Alignment:
| Q |
83 |
caagtggtgagtctgttcgttagttatgttgattcactattcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatga |
182 |
Q |
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| T |
35161998 |
caagtggtgagtctgttcgtta----tgttgattcactattcattccctgctgcaattcaatggatatatattcttgttggaagatgattaataacatga |
35162093 |
T |
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| Q |
183 |
taatgtgttccattgtagctaatttaatcatctatgattcatttttcctttctctacttttctatcagatttt |
255 |
Q |
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| T |
35162094 |
taatgtgttccattgtagctaatttaatcatcgatgattaatttttcctttctctacttttctatcagatttt |
35162166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 39845115 - 39845241
Alignment:
| Q |
32 |
ctgctgctctgaaaccccgcagaagaagcccagttcttcgatctatgttatcaagtggtgagtctgttcgtta---gttatgttgattcactattcattc |
128 |
Q |
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||||| ||||||||||||||||||||||| || ||| || |||| ||||| || ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39845115 |
ctgctcctctgaaaccccgcagaagaagcgcaattcgtcaatctctgttaccatgtggtgagtctgttcgttactcgttatgttgattcactattcattc |
39845214 |
T |
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| Q |
129 |
cct-gctgcaattcaatggatatatat |
154 |
Q |
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| T |
39845215 |
cctccctgcaattcaatggatatatat |
39845241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 39845273 - 39845369
Alignment:
| Q |
156 |
cttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatctatgattcatttttcctttctctacttttctatcagatttt |
255 |
Q |
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| T |
39845273 |
cttgttggaagatgattaatgacatgataatgtgttccattgtagttaattta---atcgatgattaattgttcctttctctacttttctatcagatttt |
39845369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 39840359 - 39840417
Alignment:
| Q |
194 |
attgtagctaatttaatcatctatgattcatttttcctttctctacttttctatcagatttt |
255 |
Q |
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| T |
39840359 |
attgtagctaatttaatcc---atgattaattgttcctttctctacttttctatcagatttt |
39840417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 35161931 - 35161970
Alignment:
| Q |
19 |
cctccttcgtcctctgctgctctgaaaccccgcagaagaa |
58 |
Q |
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| T |
35161931 |
cctccttcgtcttctgctgctctgaaatcccgcagaagaa |
35161970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 39840291 - 39840348
Alignment:
| Q |
77 |
tgttatcaagtggtgagtctgttcgtta-----gttatgttgattcactattcattcc |
129 |
Q |
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| T |
39840291 |
tgttaccaactggtgagtctgttcgttagttatgttatgttgattcactattcattcc |
39840348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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