View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_low_24 (Length: 247)
Name: NF17876_low_24
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 94 - 246
Target Start/End: Original strand, 14242698 - 14242850
Alignment:
| Q |
94 |
ttaattttatgtgatgagacacaagagaaatgacaaggtttataagtgcaaggagattaatttatttttggagttaagatattaggaagataaaattgag |
193 |
Q |
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| T |
14242698 |
ttaattttatgttatgagacacaagagaaatgacaaggtttataaatgcaaggagattaatttatttttggagttaagatattaggaaggtaaaattgag |
14242797 |
T |
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| Q |
194 |
cgttaatgaactaaaggatgatatgggttggttttacggcactctctatattg |
246 |
Q |
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| T |
14242798 |
cgttaatgaactaaaggatgatatgggttggttttacggcactctctatattg |
14242850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 55 - 246
Target Start/End: Complemental strand, 12956006 - 12955819
Alignment:
| Q |
55 |
agaatttgtggttaattagattttgaggtttcttgtagtttaattttatgtgatgagacacaagagaaatgacaaggtttataagtgcaaggagattaat |
154 |
Q |
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| T |
12956006 |
agaatttgtggttaattagattttgaggtttcttgtggtttaattttgtgtgatgaggcacaagtgaaatga-gaggtttataagtacaa-tagtttaat |
12955909 |
T |
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| Q |
155 |
ttatttttggagttaagatattaggaagataaaattgagcgttaatgaactaaaggatgatatgggttggttttacggcactctctatattg |
246 |
Q |
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| T |
12955908 |
ttatttttggagttaaaatgttaggaaggtaaaattgagcgttaataaattaaagga--atatgggttggttttacggttctctctatattg |
12955819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 14242441 - 14242523
Alignment:
| Q |
20 |
aaacaatatgatgaagaggccatgtgttggaattaagaatttgtggttaattagattttgaggtttcttgtagtttaatttta |
102 |
Q |
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| T |
14242441 |
aaacaagatgatgaagaggccatgtgttggaattaagaatttgtggttaattagattttgaggtttcttgtagtttaatttta |
14242523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 14242903 - 14242931
Alignment:
| Q |
188 |
attgagcgttaatgaactaaaggatgata |
216 |
Q |
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| T |
14242903 |
attgagcgttaatgaactaaaggatgata |
14242931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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