View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_low_26 (Length: 241)
Name: NF17876_low_26
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 11116252 - 11116040
Alignment:
| Q |
12 |
aacctgtgaaatttgatgagtagatgcccaatagataatgtaacaaactccatgagtagtgaaaagtgtcataagcacgtgcccaagccaaatgtggtat |
111 |
Q |
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| T |
11116252 |
aacctgtgaaatttgatgagtagatgcccaatagataatgtaacaaactccatgagtagtgaaaagtgtcataagcacgtgcccaagccaaatgtggtat |
11116153 |
T |
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| Q |
112 |
ttgatgcaaccttcagaagtgaggccaaatattggtagcacggttgatccacgagtcactgggaaaaataacaatgccaaacatatgttaccaacaagac |
211 |
Q |
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| T |
11116152 |
ttgatgcaaccttcagaagtgaggccaaatattggtagcacggttgatccacgagtcactgggaaaaataacaatgccaaacatatgttaccaacaagac |
11116053 |
T |
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| Q |
212 |
ctaaccttagtgc |
224 |
Q |
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||||||||||||| |
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| T |
11116052 |
ctaaccttagtgc |
11116040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 11104585 - 11104380
Alignment:
| Q |
12 |
aacctgtgaaatttgatgagtagatgcccaatagataatgtaacaaactccatgagtagtgaaaagtgtcataagcacgtgcccaagccaaatgtggtat |
111 |
Q |
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| T |
11104585 |
aacctctgacattttattagtagatgcccaataggtgatgtaacaaattccatgagttgtgaaaattgccataagtatgtgtccaagccaaatatgatat |
11104486 |
T |
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| Q |
112 |
ttgatgcaaccttcagaagtgaggccaaatattggtagcacggttgatccacgagtcactgggaaaaataacaatgccaaacatatgttaccaacaagac |
211 |
Q |
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| T |
11104485 |
ttgatgcaaccttcagaagtgaggccaaatattggtaggacagatgatccacgtgtcaccgggaaaaacaagaatgccaaacatatgttcccaacaagac |
11104386 |
T |
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| Q |
212 |
ctaacc |
217 |
Q |
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|||||| |
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| T |
11104385 |
ctaacc |
11104380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 11591148 - 11591092
Alignment:
| Q |
12 |
aacctgtgaaatttgatgagtagatgcccaatagataatgtaacaaactccatgagt |
68 |
Q |
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||||| ||| ||||||| |||||||||||||| ||| |||||||||| ||||||||| |
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| T |
11591148 |
aacctctgacatttgattagtagatgcccaatggatgatgtaacaaattccatgagt |
11591092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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