View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_low_27 (Length: 236)
Name: NF17876_low_27
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40602189 - 40601974
Alignment:
| Q |
1 |
atggaaactagagtggcaaaaagaaatattaaaaaaggtaaggtagagtagagtgatgatgataaaagaatagaaggattgacatttgatggtgacaagc |
100 |
Q |
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| T |
40602189 |
atggaaactagagtggcaaaaagaaatattaaaaaaggtaaggtagagtagagtgatgatgataaaagaatagaaggattgacatttgatggtgacaagc |
40602090 |
T |
|
| Q |
101 |
actgatcgatgttaattactacactatcactgttttaagtttaactcacacagttccagttccagttccagacagcaagagcctgaaaccgaatggtttg |
200 |
Q |
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| T |
40602089 |
actgatcgatgttaattactacactatcactgttttaagtttaactcacacagttccagtt------ccagacagcaagagcctgaaaccgaatggtttg |
40601996 |
T |
|
| Q |
201 |
atggtgccccaacagtgtaagt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
40601995 |
atggtgccccaacagtgtaagt |
40601974 |
T |
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