View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_low_3 (Length: 711)
Name: NF17876_low_3
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 9 - 672
Target Start/End: Original strand, 48068565 - 48069226
Alignment:
| Q |
9 |
gagaagcataggttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaa |
108 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48068565 |
gagaaacataggttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaa |
48068664 |
T |
|
| Q |
109 |
taaatgtatttccatcatttgatgttcgttccttgattgttccatgctcaaacactgtccaatccttaatgttgtgatcaaatcctggatttactataat |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48068665 |
taaatgtatttccatcatttgatgttcgttccttgattgttccatgctcaaacaccgtccaatccttaatgttgtgatcaaatcctggatttactataat |
48068764 |
T |
|
| Q |
209 |
gccacctccatattgtgctctctgaggttctgggacacactgctttatttcaagacaagtttgtgacttaaaacacgttgatgtgaaatcatccaattgg |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48068765 |
gccacctccatattgtgctctctgaggttctgggacacactggtttatttcaagacaagtttgtgacttaaaacacattgatgtgaaatcatccaattgg |
48068864 |
T |
|
| Q |
309 |
attaataatatactagttttatgtcacgtcaatnnnnnnncttgctacttcgcaatttttgattcaaaactaggagtgcgggacaaaaatggattttatg |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48068865 |
attaataatatactagttttatgtcacgtcaataaaaaaagttgctaattcgcaatttttgattcaaaactatgagtgcgggacaaaaatggattttatg |
48068964 |
T |
|
| Q |
409 |
aaggaaaaaattgtgagtgagtaaaaatatgagaccaaaactacaattgagtctcatcgtaannnnnnngacgagacacttttagtaaatgaaaggacta |
508 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| |
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| T |
48068965 |
aaggagaaaattgtgagtgagtaaaaatat--gaccaaaactacaattgagtctcatcgtaatttttttgacgagacacttttagtaaataaaatgacta |
48069062 |
T |
|
| Q |
509 |
aaaagaatagaaaaatgataaaagacacgacaaatattttcgtgctacacacacgaatgtggtaacaacctccatatacaagggtttctctcgatttcta |
608 |
Q |
| |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48069063 |
aaaagaatagaaaaatgctaaaagacacgataaatattttcgtgctacacacacgaatgtggtaacaacctccatatacaagggtttctctctatttcta |
48069162 |
T |
|
| Q |
609 |
cgttgggttttcatcttcatatcatccttttatatttccaatcgttattgagacctcttttata |
672 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48069163 |
tattgggttttcatcttcatatcatccttttatattttcaatcgttattgagacctcttttata |
48069226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 48063920 - 48064162
Alignment:
| Q |
20 |
gttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaataaatgtattt |
119 |
Q |
| |
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|||||||||||| || ||||||||| |||||| ||||||||| || ||||| |||| ||| |||| |||| |||||||||| ||||||| ||| ||||| |
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| T |
48063920 |
gttaccagaaaacatgtatatcattcctttcttcagttggaccttctgtgagaaaccatccaatgtttgtcttctgttgctagcaacaatgaatctattt |
48064019 |
T |
|
| Q |
120 |
ccatcatttgatgttcgttccttgattgttccatgctcaaacactgtccaatccttaatgttgtgatcaaatcctggatttactataatgccacctccat |
219 |
Q |
| |
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||||||||||| ||||||||| ||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48064020 |
tcatcatttgatattcgttcctcgattgttccatttccaaacactctccaaccctttatgttgtgatcaaatcctggatttactataatgcctcctccat |
48064119 |
T |
|
| Q |
220 |
attgtgctctctgaggttctgggacacactgctttatttcaag |
262 |
Q |
| |
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||||||| |||| |||||||| |||||||||||||||||||| |
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| T |
48064120 |
attgtgccctcttaggttctgtcacacactgctttatttcaag |
48064162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 48101162 - 48101407
Alignment:
| Q |
9 |
gagaagcataggttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaa |
108 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||| |||||| ||||||||| || ||||| |||||||| ||||||||||||||||||||| |||||| |
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| T |
48101162 |
gagaaacataggttaccagaaaaagtatatatcattcctttcttcagttggaccttctgtgaaaaactatccaatggttgtgttctgttgctggcaacaa |
48101261 |
T |
|
| Q |
109 |
taaatgtatttccatcatttgatgttcgttccttgattgttccatgctcaaacactgtccaatccttaatgttgtgatcaaatcctggatttactataat |
208 |
Q |
| |
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| ||| ||||||| | |||||| |||||||| ||||||||||| |||||||| |||| | || ||||||||||||||||||||||||||| |||| |
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| T |
48101262 |
tgaatctatttccgttgtttgatactcgttcctcgattgttccatttccaaacactttccagccatttatgttgtgatcaaatcctggatttactgtaat |
48101361 |
T |
|
| Q |
209 |
gccacctccatattgtgctctctgaggttctgggacacactgcttt |
254 |
Q |
| |
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||| || ||||||||||| |||| |||||||| |||||||||||| |
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| T |
48101362 |
gcctcccccatattgtgccctcttaggttctgtcacacactgcttt |
48101407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 48107589 - 48107808
Alignment:
| Q |
20 |
gttaccagaaaaaatatatatcatttctttctccagttggactttttgtgataaactatctaatggttgtgttctgttgctgacaacaataaatgtattt |
119 |
Q |
| |
|
|||||| |||||| ||||||||| | ||||||| || || || ||||||| ||||||||||||| ||||||||| |||||| ||||||| ||| ||||| |
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| T |
48107589 |
gttacctgaaaaagtatatatcaatcctttctctagctgaaccgtttgtgaaaaactatctaatgattgtgttcttttgctggcaacaatgaatctattt |
48107688 |
T |
|
| Q |
120 |
ccatcatttgatgttcgttccttgattgttccatgctcaaacactgtccaatccttaatgttgtgatcaaatcctggatttactataatgccacctccat |
219 |
Q |
| |
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|||||||||||| | ||||||| |||||||||| |||| ||||||||| ||| ||||||||||||||||| | |||||||||||| || ||||||| |
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| T |
48107689 |
ccatcatttgatatacgttcctcaattgttccatttccaaatactgtccaaccctctatgttgtgatcaaatccggaatttactataattccccctccat |
48107788 |
T |
|
| Q |
220 |
attgtgctctctgaggttct |
239 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
48107789 |
attgtgctctttgaggttct |
48107808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 592 - 694
Target Start/End: Original strand, 10396466 - 10396569
Alignment:
| Q |
592 |
gtttctctcgatttctacgttgggttttcatcttcatatcatccttttatatttccaatcgttattgagacctc-ttttataactgttcacgtaattaac |
690 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||| |
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| T |
10396466 |
gtttctctttatttctacgttgtattttcatcttcatatcctccttttatattttcaatcgatattgagacctctttttataactgttcaagtaattaac |
10396565 |
T |
|
| Q |
691 |
ttag |
694 |
Q |
| |
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|||| |
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|
| T |
10396566 |
ttag |
10396569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 517 - 572
Target Start/End: Original strand, 10396383 - 10396438
Alignment:
| Q |
517 |
agaaaaatgataaaagacacgacaaatattttcgtgctacacacacgaatgtggta |
572 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||||||||| | |||||||||||||| |
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|
| T |
10396383 |
agaaaaatggtaaatgacacaacaaatattttcgtgctaaagacacgaatgtggta |
10396438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 592 - 664
Target Start/End: Original strand, 8913440 - 8913512
Alignment:
| Q |
592 |
gtttctctcgatttctacgttgggttttcatcttcatatcatccttttatatttccaatcgttattgagacct |
664 |
Q |
| |
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||||||||| ||||| | |||| ||||| ||||||||||| ||||||||||||| || ||| ||||||||||| |
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|
| T |
8913440 |
gtttctctctatttcaatgttgtgtttttatcttcatatcctccttttatattttcagtcgatattgagacct |
8913512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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