View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_low_30 (Length: 219)
Name: NF17876_low_30
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 6709301 - 6709102
Alignment:
| Q |
5 |
gacatcatcatcatcatgcatgccaaatnnnnnnngtcatataatattttatttattatttctttataattgcctcttataatcaatttaatgacaatgt |
104 |
Q |
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| T |
6709301 |
gacaccatcatcatcatgcatgccaaataaaaaaagtcatataatattctatttattatttctttataattgcctcttataatcaatttaatgacaatgt |
6709202 |
T |
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| Q |
105 |
ccttttattatagtatacctatttgtctttctatatttctatgttacatattcttgacaggtaggttatcatgccctcccacttaaattagttatattct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6709201 |
ccttttattatagtatacctatttgtctttctatatttctatgttacatattcttgacaggtaggtcatcatgccctcccacttaaattagttatattct |
6709102 |
T |
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