View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_low_4 (Length: 519)
Name: NF17876_low_4
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 20 - 500
Target Start/End: Complemental strand, 234646 - 234166
Alignment:
| Q |
20 |
tacttgactatcattctaattcattttatttgaagcttggatattagaacattaaatcgtgggtacaccggtgtgcaacactttatccaaatcaccatag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
234646 |
tacttgactatcattctaattcattttatttgaagcttggatattagaacattaaatcgtgggtacaccggtgtgcaacactttatccaaatcaccatag |
234547 |
T |
|
| Q |
120 |
atttcaacaagtcttgcatttattcattttgagttcagctaaaggttttaataaatannnnnnnccatgaagtttttaaaattgattgatttttacaaac |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
234546 |
atttcaacaagtcttgcatttattcattttgagttcagctaaaggttttaataaatatttttttccatgaagtttttaaaattgattgatttttacaaac |
234447 |
T |
|
| Q |
220 |
acctatgacttctagaatgtaaggattgacttgacttgaagtaccattattgctgaactgtggattatagctttgttagaggcacaacataacctctcat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
234446 |
acctatgacttctagaatgtaaggattgacttgacttgaagtaccattattgctgaactgtggattatagctttgttagaggcacaacataacctctcat |
234347 |
T |
|
| Q |
320 |
tacactggtgtggttctgaattccaacaattttttgcctgatattttaatttttaaatattccagaggtgcgttcttgatattgggtaatgcccaggctg |
419 |
Q |
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| T |
234346 |
tacactggtgtggttctgaattccaacaattttttgcctgatattttaatttttaaatattccagaggtgcgttcttgatattgggtaatgcccaggctg |
234247 |
T |
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| Q |
420 |
agattgagcaaggaaagtcttcgaatatatttgatttcatgtttaggctgagactgtgctgcaaaatttaatcacaagtct |
500 |
Q |
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| T |
234246 |
agattgagcaaggaaagtcttcgaatatatctgatttcatgtttaggctgagactgtgctgcaaaatttaatcacaagtct |
234166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 20 - 403
Target Start/End: Original strand, 36418960 - 36419325
Alignment:
| Q |
20 |
tacttgactatcattctaattcattttatttgaagcttggatattagaacattaaatcgtgggtacaccggtgtgcaacactttatccaaatcaccatag |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||| |
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| T |
36418960 |
tacttgactatcattctaattcattttatttgaagcttggatattagaacattaaatcgtgggtacgctggtgtgcgacattttatccaaatcaccatag |
36419059 |
T |
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| Q |
120 |
atttcaacaagtcttgcatttattcattttgagttcagctaaaggttttaataa---atannnnnnnccatgaagtttttaaaattgattgatttttaca |
216 |
Q |
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| T |
36419060 |
atttcgacaagtcttgcatttattcattctgagttcagctaaaggttttaaaaagatttttttttttcaatgaagtttttagaattgattgatttttaca |
36419159 |
T |
|
| Q |
217 |
aacacctatgacttctagaatgtaaggattgacttgacttgaagtaccattattgctgaactgtggattatagctttgttagaggcacaacataacctct |
316 |
Q |
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| T |
36419160 |
aacacctatga---------------------cttgacttgaagggcaattattgctgaactggggattttagctttgttagaggcacagaataacctct |
36419238 |
T |
|
| Q |
317 |
cattacactggtgtggttctgaattccaacaattttttgcctgatattttaatttttaaatattccagaggtgcgttcttgatattg |
403 |
Q |
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|||||| || ||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36419239 |
cattacgttgttgtggatctgaattccaacaatttcttacctgatattttaatttttaaatattccagaggtgcattcttgatattg |
36419325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 405 - 459
Target Start/End: Original strand, 36419546 - 36419600
Alignment:
| Q |
405 |
gtaatgcccaggctgagattgagcaaggaaagtcttcgaatatatttgatttcat |
459 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36419546 |
gtaatgctcaggctgagattgagcaaggaaagtcttcgaatatatttgatttcat |
36419600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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