View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17876_low_8 (Length: 359)
Name: NF17876_low_8
Description: NF17876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17876_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 7997691 - 7997458
Alignment:
| Q |
21 |
aaacaaatcattgctcagtttcaacaatttttgattggctgcttcactaaaattatggatcaatcgactcgctgatttgacataaaccaaatacacctag |
120 |
Q |
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| T |
7997691 |
aaacaaatcattgctcagtttcagcaatttttgattggctgcttcactaaaattatggatcaatcgactcattgatttgacataaaccaaataca-ctag |
7997593 |
T |
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| Q |
121 |
ttatgttaaacaataacttgcatcacatcttaactcttacgcc-----ttaatcgagtacaaccgaatcctaagctcttgaatggattcttttcagattc |
215 |
Q |
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| T |
7997592 |
ttatgttaaatgataacttgcatcacatcttaactcttacaccttaaattaatcgagtacagccaaatcctaagctcttgaatgtattcttttcagattc |
7997493 |
T |
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| Q |
216 |
agatgcatgatggatctagacatttaaaaataaga |
250 |
Q |
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|||||||||||| |||| ||||||||| |||||| |
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| T |
7997492 |
agatgcatgatgagtctatacatttaaagataaga |
7997458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 7996742 - 7996641
Alignment:
| Q |
119 |
agttatgttaaacaataacttgcatcacatcttaactcttacgccttaatcgagtacaaccgaatcc-taagctcttgaatggattcttttcagattcag |
217 |
Q |
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|||||||||| | | |||| || |||||||||||||||| | | ||||||| |||||| || ||||| ||||||| ||||| |||| || ||||||||| |
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| T |
7996742 |
agttatgttatatattaacctgtatcacatcttaactctgaagtcttaatcaagtacagccaaatccataagctcaggaatgtattcattccagattcag |
7996643 |
T |
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| Q |
218 |
at |
219 |
Q |
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|| |
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| T |
7996642 |
at |
7996641 |
T |
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