View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17877_high_12 (Length: 314)
Name: NF17877_high_12
Description: NF17877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17877_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 95 - 300
Target Start/End: Complemental strand, 24563681 - 24563475
Alignment:
| Q |
95 |
ttgatcgtggtatagctaccaagggcttttccaatacatttgctctgattcaagttatgcaccttcttggatttgtttcggatcacactgttatctcaat |
194 |
Q |
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| T |
24563681 |
ttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttatgaaccttcttggaattggttcggatcacactgttatctcaaa |
24563582 |
T |
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| Q |
195 |
agctttggaagatatctcttatggtacgaagcagaggaaagttcatgctgatttagtttgtagagtgtttgat-aaagatgataggtgtaattcagggtg |
293 |
Q |
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| T |
24563581 |
agctttggaagatatctcctatggtacgaagaagaggaaagtacacagtgattcagtttgtagagtgtttggtcaaagatgataggtgtaattcagggtg |
24563482 |
T |
|
| Q |
294 |
catgatg |
300 |
Q |
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|| |||| |
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| T |
24563481 |
cacgatg |
24563475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 45536102 - 45536237
Alignment:
| Q |
20 |
gatttaggtttcaatggctatccacatacacttggtcagatggtagggtagtagaggaaaatgttcaacgccgacttgatcgtggtatagctaccaaggg |
119 |
Q |
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| T |
45536102 |
gatttaggtttcaatggctatccacatacacttggtcaaatggtagagtagaagaggaaaacgttcaacgccgacttgatcgtggtatagctaccaaggg |
45536201 |
T |
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| Q |
120 |
cttttccaatacatttgctctgattcaagttatgca |
155 |
Q |
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| T |
45536202 |
cttttccaatacatttgctctgattcaagttatgca |
45536237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 183 - 300
Target Start/End: Original strand, 45536239 - 45536356
Alignment:
| Q |
183 |
tgttatctcaatagctttggaagatatctcttatggtacgaagcagaggaaagttcatgctgatttagtttgtagagtgtttgataaagatgataggtgt |
282 |
Q |
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|||||||||| ||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
45536239 |
tgttatctcattagctttagaagatatctcctaaggtacaaagcagaggaaagttcatgctgatttagtttgtagagtgtttgaaaaagatgacaggtgc |
45536338 |
T |
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| Q |
283 |
aattcagggtgcatgatg |
300 |
Q |
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|||||||||||||||||| |
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| T |
45536339 |
aattcagggtgcatgatg |
45536356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 44337541 - 44337428
Alignment:
| Q |
79 |
aatgttcaacgccgacttgatcgtggtatagctaccaagggcttttccaatacatttgctctgattcaagttatgcaccttcttggatttgtttcggatc |
178 |
Q |
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||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
44337541 |
aatgttcaaagccaacttgatcgtggtatggctactaagggcttttccaatacatttgctctgattcaagttacgcaccttcttgaatttggttcggatc |
44337442 |
T |
|
| Q |
179 |
acactgttatctca |
192 |
Q |
| |
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|||||| ||||||| |
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| T |
44337441 |
acactgctatctca |
44337428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 19190344 - 19190458
Alignment:
| Q |
19 |
tgatttaggtttcaatggctatccacatacacttggtcagatggtagggtagtagaggaaaatgttcaacgccgacttgatcgtggtatagctaccaagg |
118 |
Q |
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|||||||||||||| | |||||||| |||||||||| | ||||||| | || || |||||||||| || || || |||||||| |||| | ||| | | |
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| T |
19190344 |
tgatttaggtttcactagctatcca--tacacttggtaaaatggtagagaagaaggggaaaatgttgaatgctgaattgatcgttgtatggttacttatg |
19190441 |
T |
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| Q |
119 |
gcttttccaatacattt |
135 |
Q |
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|||||||||||||||| |
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| T |
19190442 |
acttttccaatacattt |
19190458 |
T |
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