View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17877_high_16 (Length: 250)
Name: NF17877_high_16
Description: NF17877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17877_high_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 125 - 250
Target Start/End: Original strand, 32598146 - 32598275
Alignment:
| Q |
125 |
gctaccatcttttttatc----tatcatttttgtgttataaatctataaaaattttaattctaaagctatatgtatattctgttcaattgcaaccatact |
220 |
Q |
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| T |
32598146 |
gctaccatcttttttatctatctatcatttttgtcttacaaatctataaatattttaattctaaagctatatgtatattttgttcaattgcaaccatact |
32598245 |
T |
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| Q |
221 |
aatgacaagaacatatgtccaaaattattc |
250 |
Q |
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||||| |||||||||||||||||||||||| |
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| T |
32598246 |
aatgataagaacatatgtccaaaattattc |
32598275 |
T |
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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 32598086 - 32598144
Alignment:
| Q |
16 |
ttaacaatattctcaagtatatagttagaaggacgatagtactatgccgccaccacatc |
74 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32598086 |
ttaacaatattctcaagtatatagttagaaggacgatagtactatgccgccaccacatc |
32598144 |
T |
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