View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17877_high_4 (Length: 482)
Name: NF17877_high_4
Description: NF17877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17877_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 2352813 - 2353279
Alignment:
| Q |
1 |
aacactgcttaagtagtaagcaccaagtgggtttgattatacgttagagtttaaaaaatcttagttgtattgtagataagacaattatgcaggccagggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2352813 |
aacactgcttaagtagtaagcaccaagtgggtttgattatacgttagagtttaaaaaatcttagttgtattgtagataagacaattatgcaggccagggt |
2352912 |
T |
|
| Q |
101 |
tttttctcagaatatatcaaacatcccatcctcgatctacaagaaagtgacattacatatcaaatgtggcactgatgtagacatgccacaataggatcat |
200 |
Q |
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| T |
2352913 |
tttttctcagaatatatcaaacatcccatcctcgatctacaagaaagtgacattacatatcaaatgtggcaccgatgtagacatgccacaataggatcat |
2353012 |
T |
|
| Q |
201 |
taactatcataactttgcacatgatgactttaatctgtggtgtaaaacatatgttttgcaatgagagattgcatagatttgtctcaatgaacaaagaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2353013 |
taactatcataactttgcacatgatgactttaatctgtggtgtaaaacatatgttttgcaatgagagattgcatagatttgtctcaatgaacaaagaaaa |
2353112 |
T |
|
| Q |
301 |
agacgtatgtgtcgagattgtaaaaagcatgtttgctaagtgtgtggatcatggtccatgcatgcaggatgaggtgtacaactgcgttcatggatggtat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2353113 |
agacgtatgtgtcgagattgtaaaaagcatgtttgctaagtgtgtggatcatggtccatgcatgcaggatgaggtgtacaactgcgttcatggatggtat |
2353212 |
T |
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| Q |
401 |
tgaatgtatatatcacctatatggaggttattactacataaactcagatatttgtgtggtgttgagt |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
2353213 |
tgaatgtatatatcacctatatggaggttattactacataaactgagatatttgtgtggtgctgagt |
2353279 |
T |
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