View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17877_high_5 (Length: 469)
Name: NF17877_high_5
Description: NF17877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17877_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 38 - 307
Target Start/End: Complemental strand, 35129799 - 35129530
Alignment:
| Q |
38 |
accattacaatgtcttcatataggttatcaataggtacatatctagacagttgcagttcatacaacattctcaaatttacaagaagaaaatccccaacct |
137 |
Q |
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| T |
35129799 |
accattacaatgtcttcatataggttatcaataggtacatatctaaacagttgcagttcatacaacattctcaaatttacaagaagaaaaaccccaacct |
35129700 |
T |
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| Q |
138 |
tttcaagtatatatcctgcaaaaagagcgatgggtgctcgagtgattcaatgcatggcattctaatatttgagttaatgtccctatagcgatgcacaaat |
237 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35129699 |
tttcaagtatatattctgcaaaaggagcgatgggtgctcgagtgattcaatgcatgacattctaatatttgagttaatttccctatagcgatgcacaaat |
35129600 |
T |
|
| Q |
238 |
aacctagtaaatatcttgctcatcatctcctccaacagtgttattttcttctcttcagtatccaaatgtt |
307 |
Q |
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| T |
35129599 |
aacctggtaaatatcttgctcatcatctcctccaacagtgttattttcttctcttcagtatccaaatgtt |
35129530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 314 - 450
Target Start/End: Complemental strand, 35129220 - 35129084
Alignment:
| Q |
314 |
aagcacataatgcaacattagaaaaggaggaaaaggcttagcccaacaaaacataacaatgaaaaggtgatattgaagccaattcaaaggaagaattttg |
413 |
Q |
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| T |
35129220 |
aagcacataatgcaacattagaaaaggaggaaaaggcttagcccaacaaaacataacaatgaaaaggtgatattgaagccaattcaaaggaagaattttg |
35129121 |
T |
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| Q |
414 |
ttataaactgattaatcttttaaaaacattacacata |
450 |
Q |
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| T |
35129120 |
ttataaactgattaatcttttaaaaacattacacata |
35129084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 43838379 - 43838465
Alignment:
| Q |
38 |
accattacaatgtcttcatataggttatcaataggtacatatctagacagttgcagttcatacaacattctcaaatttacaagaaga |
124 |
Q |
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| T |
43838379 |
accattacaatgtcttcatataggttatcaataggcacatatctagacaattgaagttcatacaaccttttcaaatttacaagaaga |
43838465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 43842078 - 43842144
Alignment:
| Q |
176 |
cgagtgattcaatgcatggcattctaatatttgagttaatgtccctatagcgatgcacaaataacct |
242 |
Q |
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| T |
43842078 |
cgagtgattcaatgcatgacattctaatatttgggtcaatgtcccggtagcgatgtacaaataacct |
43842144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 43842262 - 43842305
Alignment:
| Q |
243 |
agtaaatatcttgctcatcatctcctccaacagtgttattttct |
286 |
Q |
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| T |
43842262 |
agtaaatatcttgcgcatcatctcttccaacagtgttattttct |
43842305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 401
Target Start/End: Original strand, 4529744 - 4529824
Alignment:
| Q |
320 |
ataatgcaacattagaaaaggaggaaaaggcttagcccaacaaaacataacaatgaaaaggtgatattgaagccaattcaaa |
401 |
Q |
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| T |
4529744 |
ataatgcaacattagatatggaggaaaagacttag-ccacaaaaacatgacaatgaaaacatgacattgaaggaaattcaaa |
4529824 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 18144140 - 18144226
Alignment:
| Q |
38 |
accattacaatgtcttcatataggttatcaataggtacatatctagacagttgcagttcatacaacattctcaaatttacaagaaga |
124 |
Q |
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| T |
18144140 |
accattacaatgtcttcatatagcttatcaataggcacatatttagacaattgaagttcatacaaccttctcaaatttacaagaaga |
18144226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 18221521 - 18221435
Alignment:
| Q |
38 |
accattacaatgtcttcatataggttatcaataggtacatatctagacagttgcagttcatacaacattctcaaatttacaagaaga |
124 |
Q |
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||||||||||||||||||||||| ||||||||||| || ||| |||||| ||| |||||||||||| |||||||||||||||||||| |
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| T |
18221521 |
accattacaatgtcttcatatagtttatcaataggcacgtatttagacaattgaagttcatacaaccttctcaaatttacaagaaga |
18221435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 18220350 - 18220242
Alignment:
| Q |
176 |
cgagtgattcaatgcatggcattctaatatttgagttaatgtccctatagcgatgcacaaataacctagtaaatatcttgctcatcatctcctccaacag |
275 |
Q |
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|
|||| ||||||||||||| |||||||||||||| | || ||||| || ||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
18220350 |
cgagcgattcaatgcatgacattctaatatttggatcaaggtcccggtaatgatgcacaaataacccagtaaatatcttgcccatcatctcctccaacaa |
18220251 |
T |
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| Q |
276 |
tgttatttt |
284 |
Q |
| |
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||||||||| |
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| T |
18220250 |
tgttatttt |
18220242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 286
Target Start/End: Original strand, 18145311 - 18145421
Alignment:
| Q |
176 |
cgagtgattcaatgcatggcattctaatatttgagttaatgtccctatagcgatgcacaaataacctagtaaatatcttgctcatcatctcctccaacag |
275 |
Q |
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|||| ||||||||||||| |||||||||||||| | || || ||| || |||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
18145311 |
cgagcgattcaatgcatgacattctaatatttggatcaaggttcctgtaacgatgcacaaataacccggtaaatatcttgcccatcatctcctccaacga |
18145410 |
T |
|
| Q |
276 |
tgttattttct |
286 |
Q |
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||||||||||| |
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| T |
18145411 |
tgttattttct |
18145421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 19864125 - 19864042
Alignment:
| Q |
38 |
accattacaatgtcttcatataggttatcaataggtacatatctagacagttgcagttcatacaacattctcaaatttacaaga |
121 |
Q |
| |
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||||||||||| || |||| || ||||||||||| ||||||||||||| ||| ||||||| |||| ||||||||||||||||| |
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| T |
19864125 |
accattacaatttcctcatgtaagttatcaatagacacatatctagacaattgaagttcatgcaaccttctcaaatttacaaga |
19864042 |
T |
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