View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17877_high_6 (Length: 446)
Name: NF17877_high_6
Description: NF17877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17877_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 45740188 - 45739768
Alignment:
| Q |
17 |
atattcagctatggctaatacaattctttgtggcggcctccaatggcagtttttcaacatagccaaagctcttttcatggcaataatagcctcatccatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45740188 |
atattcagctatggctaatacaattctttgtggcggcctccaatggcagtctttcaacatagccaaagctcttttcatggcaataatagcctcatccatc |
45740089 |
T |
|
| Q |
117 |
ttttgccaattgacatatccttcaatgagaatttcccacgtcttgtagtttggacagccacccttctgcagggtgtggagatgcaatgattcagcttctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45740088 |
ttttgccaattgacatatccttcaatgagaatttcccacgtcttgtagtttggacagccacccttctgcagggtgtggagatgcaatgattcagcttctt |
45739989 |
T |
|
| Q |
217 |
cgattaatccattccgcacatatgctcctaaaagaacattagagactctgatatcatatttttgacaattagattcccattctctgaagattcttttggc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45739988 |
tgattaatccattccgcacatatgctcctaaaagaacattagagactctgatatcatatttttgacaattagattcccattctctgaagattcttttggc |
45739889 |
T |
|
| Q |
317 |
ttgtgctatgtccccaagcttcaccaagcttgttagtatgcaaatgtagttggcacaactgattcttccaccaactgccttactggcttcccacagccgc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45739888 |
ttgtgctatgtccccaagcttcaccaagcttgttagtatgcaaatgtagttggcacaactgattcttccaccaactgccttactggcttcccacagccgc |
45739789 |
T |
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| Q |
417 |
aagactccctccctttgcttc |
437 |
Q |
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|||||||||||| |||||||| |
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| T |
45739788 |
aagactccctccttttgcttc |
45739768 |
T |
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