View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17877_high_9 (Length: 436)
Name: NF17877_high_9
Description: NF17877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17877_high_9 |
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| [»] scaffold1395 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Original strand, 43334896 - 43335283
Alignment:
| Q |
13 |
caaaggcatttttggaatatcaccacttaacttattctctccaagttggacttccataagttttcccatgtttccaatggacgacggtatagacccgttg |
112 |
Q |
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| T |
43334896 |
caaaggcatttttggaatatccccacttaacttattttctccaagttggacttccataagttttcccaagtttccaatggacgacggtatagacccgttg |
43334995 |
T |
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| Q |
113 |
agattgttcccttgcaagtcaagaagtacaaggctgtttgacatctcagatggaattggtccatgcagagaattcaggctcaaattcagggtagacaact |
212 |
Q |
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| T |
43334996 |
agattgttcccttgcaagtcaagaagtacaaggctgtttgacatctcagatggaattggtccatgcagagaattcaggctcaaattcagggtagacaact |
43335095 |
T |
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| Q |
213 |
gttgcagttgtgaaatttgaattggaatagtaccattaagcttgttcatttgaagtttaaggacttgaagattgctaagattaccaagttctggtggcaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43335096 |
gttgcagttgtgaaatttgaattggaatagtaccattaagcttgttcatttgaagtttaaggacttgaagattgctaagattaccaagttctggtggcaa |
43335195 |
T |
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| Q |
313 |
tgcaccaatcaattggttatcagccaaattcaacaaggccaatttcttacaagaacttaatccaggaggtattaaacctgtcaaatta |
400 |
Q |
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| T |
43335196 |
tgcaccagtcaattggttatcagccaaattcaacaaggccaatttcttacaagaacttaatccaggaggtattaaacctgtcaaatta |
43335283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Original strand, 43339331 - 43339718
Alignment:
| Q |
13 |
caaaggcatttttggaatatcaccacttaacttattctctccaagttggacttccataagttttcccatgtttccaatggacgacggtatagacccgttg |
112 |
Q |
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| T |
43339331 |
caaaggcatttttggaatatccccacttaacttattttctccaagttggacttccataagttttcccaagtttccaatggacgacggtatagacccgttg |
43339430 |
T |
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| Q |
113 |
agattgttcccttgcaagtcaagaagtacaaggctgtttgacatctcagatggaattggtccatgcagagaattcaggctcaaattcagggtagacaact |
212 |
Q |
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| T |
43339431 |
agattgttcccttgcaagtcaagaagtacaaggctgtttgacatctcagatggaattggtccatgcagagaattcaggctcaaattcagggtagacaact |
43339530 |
T |
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| Q |
213 |
gttgcagttgtgaaatttgaattggaatagtaccattaagcttgttcatttgaagtttaaggacttgaagattgctaagattaccaagttctggtggcaa |
312 |
Q |
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| T |
43339531 |
gttgcagttgtgaaatttgaattggaatagtaccattaagcttgttcatttgaagtttaaggacttgaagattgctaagattaccaagttctggtggcaa |
43339630 |
T |
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| Q |
313 |
tgcaccaatcaattggttatcagccaaattcaacaaggccaatttcttacaagaacttaatccaggaggtattaaacctgtcaaatta |
400 |
Q |
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| T |
43339631 |
tgcaccagtcaattggttatcagccaaattcaacaaggccaatttcttacaagaacttaatccaggaggtattaaacctgtcaaatta |
43339718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1395 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: scaffold1395
Description:
Target: scaffold1395; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Original strand, 700 - 1087
Alignment:
| Q |
13 |
caaaggcatttttggaatatcaccacttaacttattctctccaagttggacttccataagttttcccatgtttccaatggacgacggtatagacccgttg |
112 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
700 |
caaaggcatttttggaatatccccacttaacttattttctccaagttggacttccataagttttcccaagtttccaatggacgacagtatagacccgttg |
799 |
T |
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| Q |
113 |
agattgttcccttgcaagtcaagaagtacaaggctgtttgacatctcagatggaattggtccatgcagagaattcaggctcaaattcagggtagacaact |
212 |
Q |
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| T |
800 |
agattgttcccttgcaagtcaagaagtacaaggctgtttgacatctcagatggaattggtccatgcagagaattcaggctcaaattcagggtagacaact |
899 |
T |
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| Q |
213 |
gttgcagttgtgaaatttgaattggaatagtaccattaagcttgttcatttgaagtttaaggacttgaagattgctaagattaccaagttctggtggcaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
900 |
gttgcagttgtgaaatttgaattggaatagtaccattaagcttgttcatttgaagtttaaggacttgaagattgctaagattaccaagttctggtggcaa |
999 |
T |
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| Q |
313 |
tgcaccaatcaattggttatcagccaaattcaacaaggccaatttcttacaagaacttaatccaggaggtattaaacctgtcaaatta |
400 |
Q |
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| T |
1000 |
tgcaccagtcaattggttatcagccaaattcaacaaggccaatttcttacaagaacttaatccaggaggtattaaacctgtcaaatta |
1087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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