View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17877_low_10 (Length: 401)

Name: NF17877_low_10
Description: NF17877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17877_low_10
NF17877_low_10
[»] chr3 (10 HSPs)
chr3 (20-390)||(54043745-54044115)
chr3 (73-121)||(9027408-9027456)
chr3 (80-120)||(24145398-24145438)
chr3 (73-119)||(54020671-54020717)
chr3 (86-119)||(7464513-7464546)
chr3 (86-119)||(10922330-10922363)
chr3 (86-119)||(52543714-52543747)
chr3 (93-121)||(2151073-2151101)
chr3 (91-119)||(4564620-4564648)
chr3 (80-120)||(48924340-48924380)
[»] chr4 (8 HSPs)
chr4 (86-119)||(38374963-38374996)
chr4 (80-121)||(874459-874500)
chr4 (90-119)||(13121554-13121583)
chr4 (86-119)||(14197453-14197486)
chr4 (86-119)||(21318275-21318308)
chr4 (80-121)||(25999397-25999438)
chr4 (78-119)||(56204945-56204986)
chr4 (80-116)||(33024156-33024192)
[»] chr8 (6 HSPs)
chr8 (81-121)||(32319922-32319962)
chr8 (80-119)||(7553679-7553718)
chr8 (86-119)||(13105100-13105133)
chr8 (86-119)||(15079174-15079207)
chr8 (80-120)||(8687866-8687906)
chr8 (87-119)||(31511978-31512010)
[»] chr5 (7 HSPs)
chr5 (80-120)||(14124301-14124341)
chr5 (80-119)||(2642785-2642824)
chr5 (81-119)||(7861023-7861061)
chr5 (73-119)||(33654741-33654787)
chr5 (86-119)||(11720900-11720933)
chr5 (86-119)||(27651552-27651585)
chr5 (93-121)||(37054289-37054317)
[»] chr1 (15 HSPs)
chr1 (73-117)||(28679675-28679719)
chr1 (80-119)||(41573291-41573330)
chr1 (85-119)||(1864241-1864275)
chr1 (81-119)||(3248778-3248816)
chr1 (73-119)||(13054866-13054912)
chr1 (85-119)||(22388197-22388231)
chr1 (73-119)||(29935976-29936022)
chr1 (85-119)||(31962452-31962486)
chr1 (86-119)||(2889948-2889981)
chr1 (86-119)||(30548113-30548146)
chr1 (86-119)||(30678835-30678868)
chr1 (86-119)||(33153902-33153935)
chr1 (86-119)||(41973261-41973294)
chr1 (86-119)||(43843897-43843930)
chr1 (85-121)||(39916959-39916995)
[»] chr7 (8 HSPs)
chr7 (72-119)||(21411511-21411558)
chr7 (80-119)||(29461843-29461882)
chr7 (86-119)||(3584210-3584243)
chr7 (80-121)||(21099793-21099834)
chr7 (79-120)||(31037664-31037705)
chr7 (86-119)||(40187658-40187691)
chr7 (71-119)||(23221383-23221431)
chr7 (86-118)||(23863723-23863755)
[»] chr2 (18 HSPs)
chr2 (72-119)||(4897535-4897582)
chr2 (72-119)||(4944929-4944976)
chr2 (72-119)||(28644517-28644564)
chr2 (85-119)||(3904207-3904241)
chr2 (86-120)||(13922653-13922687)
chr2 (74-120)||(16407155-16407201)
chr2 (73-119)||(27935049-27935095)
chr2 (86-132)||(36171534-36171580)
chr2 (86-119)||(29809332-29809365)
chr2 (86-119)||(31815909-31815942)
chr2 (91-119)||(7001011-7001039)
chr2 (73-121)||(25603931-25603979)
chr2 (80-120)||(30089049-30089089)
chr2 (80-120)||(30125653-30125693)
chr2 (80-120)||(31476971-31477011)
chr2 (80-120)||(34364516-34364556)
chr2 (72-120)||(40874093-40874141)
chr2 (80-120)||(43356654-43356694)
[»] scaffold0182 (1 HSPs)
scaffold0182 (81-119)||(17793-17831)
[»] chr6 (6 HSPs)
chr6 (77-119)||(2617227-2617269)
chr6 (69-119)||(3373403-3373453)
chr6 (80-122)||(13655161-13655203)
chr6 (86-119)||(404169-404202)
chr6 (86-119)||(12412283-12412316)
chr6 (86-119)||(28898862-28898895)


Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 54044115 - 54043745
Alignment:
Q  20 gtacatataattatctaatgaagagtgaaatctcattttaatcccccgtaaaatgtcattgtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  54044115 gtacatataattatctaatgaagagtgaaatctcattttaatcccccataaaatgtcattgtggatttaacttagttggtaggaacaatgcataatatat 54044016  T
Q  120 atgaaatgtttaggttcaaaccccagccacnnnnnnnntcccccataaaatatgaaattcaaagatcgagactcattaaccattatgccaataattttgc 219  Q
    ||||||||||| ||||||||||||  ||||        |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  54044015 atgaaatgtttgggttcaaaccccgaccacaaaaaaaatcccccataaaatatgaaatccaaagatcgagactcattaaccattatgccaaaaattttgc 54043916  T
Q  220 agggccatttttattttgattcctctgaaagagacatattttgtgacacccaacctgacatattaatatgaaattaagggacacttagacccctgattaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  54043915 agggccatttttattttgattcctctgaaagagacatattttgtgacacccaacctgacatattaatatgaaattaagggacacttaaacccctgattaa 54043816  T
Q  320 agtgataatatttgcaaacaacagaaaacttttaaaatctctaattcatatgtccatctgattttattcat 390  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  54043815 agtgattatatttgcaaacaacaaaaaacttttaaaatctctaattcagatgtccatctgattttattcat 54043745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 9027456 - 9027408
Alignment:
Q  73 tgtcattgtgaatttaacttagttggtagggacaatgcataatatatat 121  Q
    |||||| |||||||||||||||||| | | |||||||||||||||||||    
T  9027456 tgtcatcgtgaatttaacttagttgctggagacaatgcataatatatat 9027408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 24145398 - 24145438
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatata 120  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  24145398 gtgaacttaactcagttggtagggacaatgcataatatata 24145438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 54020717 - 54020671
Alignment:
Q  73 tgtcattgtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||||||||||  ||| ||||||||||||| ||||||||||||||||    
T  54020717 tgtcattgtgagcttagcttagttggtaggaacaatgcataatatat 54020671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 7464546 - 7464513
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| |||||||||||||||||||||||||||    
T  7464546 ttaactcagttggtagggacaatgcataatatat 7464513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 10922363 - 10922330
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| |||||||||||||||||||||||||||    
T  10922363 ttaactcagttggtagggacaatgcataatatat 10922330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 52543747 - 52543714
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||||||| ||||||||||||||||    
T  52543747 ttaacttagttggtaggaacaatgcataatatat 52543714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 2151073 - 2151101
Alignment:
Q  93 agttggtagggacaatgcataatatatat 121  Q
    |||||||||||||||||||||||||||||    
T  2151073 agttggtagggacaatgcataatatatat 2151101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 4564620 - 4564648
Alignment:
Q  91 ttagttggtagggacaatgcataatatat 119  Q
    |||||||||||||||||||||||||||||    
T  4564620 ttagttggtagggacaatgcataatatat 4564648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 48924380 - 48924340
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatata 120  Q
    |||| |||| |||||||||||||||||||| ||||||||||    
T  48924380 gtgagtttagcttagttggtagggacaatgtataatatata 48924340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 38374963 - 38374996
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||||||||||||||||||||||||    
T  38374963 ttaacttagttggtagggacaatgcataatatat 38374996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 874459 - 874500
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatatat 121  Q
    ||||| |||||||||||| || ||||||||||||||||||||    
T  874459 gtgaacttaacttagttgatatggacaatgcataatatatat 874500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 13121554 - 13121583
Alignment:
Q  90 cttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||||||||||||||||||||    
T  13121554 cttagttggtagggacaatgcataatatat 13121583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 14197486 - 14197453
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| |||||||||||||||||||||||||||    
T  14197486 ttaactcagttggtagggacaatgcataatatat 14197453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 21318308 - 21318275
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| |||||||||||||||||||||||||||    
T  21318308 ttaactcagttggtagggacaatgcataatatat 21318275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 25999397 - 25999438
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatatat 121  Q
    ||||| ||| || |||||||||||||||||||||||||||||    
T  25999397 gtgaacttagctcagttggtagggacaatgcataatatatat 25999438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 56204945 - 56204986
Alignment:
Q  78 ttgtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| ||||||| |||||||| ||||||||||||||||||    
T  56204945 ttgtgagtttaactcagttggtaaggacaatgcataatatat 56204986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 33024156 - 33024192
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataata 116  Q
    |||| |||||||||||||||| |||||||||||||||    
T  33024156 gtgagtttaacttagttggtatggacaatgcataata 33024192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 32319962 - 32319922
Alignment:
Q  81 tgaatttaacttagttggtagggacaatgcataatatatat 121  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  32319962 tgaatttaacttagttgatagggacaatacataatatatat 32319922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 7553679 - 7553718
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  7553679 gtgagtttaactcagttggtagggacaatgcataatatat 7553718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 13105100 - 13105133
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| |||||||||||||||||||||||||||    
T  13105100 ttaactcagttggtagggacaatgcataatatat 13105133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 15079207 - 15079174
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| |||||||||||||||||||||||||||    
T  15079207 ttaactcagttggtagggacaatgcataatatat 15079174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 8687866 - 8687906
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatata 120  Q
    |||||||||||| | ||||||||||||||| ||||||||||    
T  8687866 gtgaatttaactcaattggtagggacaatgtataatatata 8687906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 31511978 - 31512010
Alignment:
Q  87 taacttagttggtagggacaatgcataatatat 119  Q
    ||||| |||||||||||||||||||||||||||    
T  31511978 taactcagttggtagggacaatgcataatatat 31512010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 14124301 - 14124341
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatata 120  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  14124301 gtgaacttaacttagttggtaaggacaatgcataatatata 14124341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 2642824 - 2642785
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  2642824 gtgagtttaacttagttggtagggataatgcataatatat 2642785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 7861061 - 7861023
Alignment:
Q  81 tgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  7861061 tgaatttatcttagttgatagggacaatgcataatatat 7861023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 33654741 - 33654787
Alignment:
Q  73 tgtcattgtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| ||||  |||||| |||||||||||||||||||||||||||    
T  33654741 tgtcatcgtgagcttaactcagttggtagggacaatgcataatatat 33654787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 11720900 - 11720933
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| |||||||||||||||||||||||||||    
T  11720900 ttaactcagttggtagggacaatgcataatatat 11720933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 27651585 - 27651552
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||||| ||||||||||||||||||    
T  27651585 ttaacttagttggtaaggacaatgcataatatat 27651552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 37054317 - 37054289
Alignment:
Q  93 agttggtagggacaatgcataatatatat 121  Q
    |||||||||||||||||||||||||||||    
T  37054317 agttggtagggacaatgcataatatatat 37054289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 28679675 - 28679719
Alignment:
Q  73 tgtcattgtgaatttaacttagttggtagggacaatgcataatat 117  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||    
T  28679675 tgtcattgtaaatttaacttagttggtaaagacaatgcataatat 28679719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 41573330 - 41573291
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  41573330 gtgagtttaactcagttggtagggacaatgcataatatat 41573291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 1864275 - 1864241
Alignment:
Q  85 tttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||||||| |||||||||||||||||    
T  1864275 tttaacttagttggtagagacaatgcataatatat 1864241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 3248778 - 3248816
Alignment:
Q  81 tgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  3248778 tgaacttaacttagttggtatggacaatgcataatatat 3248816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 13054866 - 13054912
Alignment:
Q  73 tgtcattgtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||| ||||||  ||| ||||||||||||||||||||||||||||||    
T  13054866 tgtccttgtgagcttagcttagttggtagggacaatgcataatatat 13054912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 22388231 - 22388197
Alignment:
Q  85 tttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||| |||||||||||||||||||||    
T  22388231 tttaacttagttgatagggacaatgcataatatat 22388197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 29935976 - 29936022
Alignment:
Q  73 tgtcattgtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||| |||||| ||||||| |||||||| ||||||||||||||||||    
T  29935976 tgtccttgtgagtttaactcagttggtatggacaatgcataatatat 29936022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 31962452 - 31962486
Alignment:
Q  85 tttaacttagttggtagggacaatgcataatatat 119  Q
    |||||||||||||||| ||||||||||||||||||    
T  31962452 tttaacttagttggtaaggacaatgcataatatat 31962486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 2889981 - 2889948
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| |||||||||||||||||||||||||||    
T  2889981 ttaactcagttggtagggacaatgcataatatat 2889948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 30548146 - 30548113
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||||| ||||||||||||||||||    
T  30548146 ttaacttagttggtaaggacaatgcataatatat 30548113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 30678868 - 30678835
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| |||||||||||||||||||||||||||    
T  30678868 ttaactcagttggtagggacaatgcataatatat 30678835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 33153935 - 33153902
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| |||||||||||||||||||||||||||    
T  33153935 ttaactcagttggtagggacaatgcataatatat 33153902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 41973261 - 41973294
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||||| |||||||||||||||||||||||||    
T  41973261 ttaacttaattggtagggacaatgcataatatat 41973294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 43843897 - 43843930
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||||| ||||||||||||||||||    
T  43843897 ttaacttagttggtaaggacaatgcataatatat 43843930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 39916959 - 39916995
Alignment:
Q  85 tttaacttagttggtagggacaatgcataatatatat 121  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  39916959 tttaactcagttggtagagacaatgcataatatatat 39916995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 21411511 - 21411558
Alignment:
Q  72 atgtcattgtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    ||||| |||||| |||| |||| |||||||||||||||||||||||||    
T  21411511 atgtctttgtgagtttagcttaattggtagggacaatgcataatatat 21411558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 29461882 - 29461843
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  29461882 gtgagtttaactcagttggtagggacaatgcataatatat 29461843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 3584210 - 3584243
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||||| ||||||||||||||||||    
T  3584210 ttaacttagttggtaaggacaatgcataatatat 3584243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 21099834 - 21099793
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatatat 121  Q
    ||||||||| || |||||||| ||||||||||||||||||||    
T  21099834 gtgaatttagctcagttggtatggacaatgcataatatatat 21099793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 31037705 - 31037664
Alignment:
Q  79 tgtgaatttaacttagttggtagggacaatgcataatatata 120  Q
    ||||| ||||||| |||||||||| |||||||||||||||||    
T  31037705 tgtgagtttaactcagttggtaggaacaatgcataatatata 31037664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 40187691 - 40187658
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| |||||||||||||||||||||||||||    
T  40187691 ttaactcagttggtagggacaatgcataatatat 40187658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 23221383 - 23221431
Alignment:
Q  71 aatgtcattgtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||| |||||  |||||| ||||||||| |||||||||||||||||    
T  23221383 aatgtcactgtgagcttaactcagttggtagagacaatgcataatatat 23221431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 23863755 - 23863723
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatata 118  Q
    ||||||||||||||| |||||||||||||||||    
T  23863755 ttaacttagttggtaaggacaatgcataatata 23863723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 4897535 - 4897582
Alignment:
Q  72 atgtcattgtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||  |||||| |||||||| ||||||||||||||||||    
T  4897535 atgtcattgtgagcttaactcagttggtaaggacaatgcataatatat 4897582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 4944929 - 4944976
Alignment:
Q  72 atgtcattgtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||  |||||| |||||||| ||||||||||||||||||    
T  4944929 atgtcattgtgagcttaactcagttggtaaggacaatgcataatatat 4944976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 28644517 - 28644564
Alignment:
Q  72 atgtcattgtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    ||||| ||||||  |||||| |||||||||||||||||||||||||||    
T  28644517 atgtccttgtgagcttaactcagttggtagggacaatgcataatatat 28644564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 3904207 - 3904241
Alignment:
Q  85 tttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||| |||||||||||||||||||||    
T  3904207 tttaacttagttgatagggacaatgcataatatat 3904241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 13922687 - 13922653
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatata 120  Q
    |||||| ||||||||||||||||||||||||||||    
T  13922687 ttaactcagttggtagggacaatgcataatatata 13922653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 16407155 - 16407201
Alignment:
Q  74 gtcattgtgaatttaacttagttggtagggacaatgcataatatata 120  Q
    ||||| ||||||||| ||||||||||| ||||| |||||||||||||    
T  16407155 gtcatcgtgaatttatcttagttggtaaggacagtgcataatatata 16407201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 27935049 - 27935095
Alignment:
Q  73 tgtcattgtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| |||| ||||||| ||||||||||||||||||| |||||||    
T  27935049 tgtcatcgtgagtttaactcagttggtagggacaatgcagaatatat 27935095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 36171534 - 36171580
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatatatgaaatgtttag 132  Q
    |||||| |||||||||||||||| ||||||||||||| || ||||||    
T  36171534 ttaactcagttggtagggacaatacataatatatatgcaaggtttag 36171580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 29809332 - 29809365
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| |||||||||||||||||||||||||||    
T  29809332 ttaactcagttggtagggacaatgcataatatat 29809365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 31815942 - 31815909
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||| |||||||||||||||||||||||||||    
T  31815942 ttaactcagttggtagggacaatgcataatatat 31815909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 7001039 - 7001011
Alignment:
Q  91 ttagttggtagggacaatgcataatatat 119  Q
    |||||||||||||||||||||||||||||    
T  7001039 ttagttggtagggacaatgcataatatat 7001011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 25603979 - 25603931
Alignment:
Q  73 tgtcattgtgaatttaacttagttggtagggacaatgcataatatatat 121  Q
    |||| ||||||| || ||| ||||| |||||||||||||||||||||||    
T  25603979 tgtccttgtgaaattgactcagttgatagggacaatgcataatatatat 25603931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 30089049 - 30089089
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatata 120  Q
    ||||| ||| || ||||||||||||||||||||||||||||    
T  30089049 gtgaacttagctcagttggtagggacaatgcataatatata 30089089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 30125653 - 30125693
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatata 120  Q
    ||||| ||| || ||||||||||||||||||||||||||||    
T  30125653 gtgaacttagctcagttggtagggacaatgcataatatata 30125693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 31476971 - 31477011
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatata 120  Q
    ||||||||| || |||||||||||| |||||||||||||||    
T  31476971 gtgaatttagctcagttggtagggagaatgcataatatata 31477011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 34364556 - 34364516
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatata 120  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  34364556 gtgagtttaacttagttggtaggaataatgcataatatata 34364516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 40874141 - 40874093
Alignment:
Q  72 atgtcattgtgaatttaacttagttggtagggacaatgcataatatata 120  Q
    ||||||| |||||||||||| ||||| || ||||||||||||| |||||    
T  40874141 atgtcatcgtgaatttaactcagttgatatggacaatgcataaaatata 40874093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 43356694 - 43356654
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatata 120  Q
    |||| |||| |||||||| ||||||||||||||||||||||    
T  43356694 gtgagtttatcttagttgttagggacaatgcataatatata 43356654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 17831 - 17793
Alignment:
Q  81 tgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  17831 tgaacttaacttagttggtagggaaaatgcataatatat 17793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 2617269 - 2617227
Alignment:
Q  77 attgtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||||||  |||||||||||||||| |||||||||||||||||    
T  2617269 attgtgagcttaacttagttggtagagacaatgcataatatat 2617227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 3373453 - 3373403
Alignment:
Q  69 aaaatgtcattgtgaatttaacttagttggtagggacaatgcataatatat 119  Q
    |||||||| | |||||||||||| ||||| || ||||||||||||||||||    
T  3373453 aaaatgtcttcgtgaatttaactcagttgatatggacaatgcataatatat 3373403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 13655161 - 13655203
Alignment:
Q  80 gtgaatttaacttagttggtagggacaatgcataatatatatg 122  Q
    ||||| |||||| |||||||| |||||||||||||||||||||    
T  13655161 gtgaaattaactcagttggtaaggacaatgcataatatatatg 13655203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 404169 - 404202
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||||| ||||||||||||||||||    
T  404169 ttaacttagttggtaaggacaatgcataatatat 404202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 12412283 - 12412316
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    |||||||||||||||| |||||||||||||||||    
T  12412283 ttaacttagttggtagagacaatgcataatatat 12412316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 28898862 - 28898895
Alignment:
Q  86 ttaacttagttggtagggacaatgcataatatat 119  Q
    ||||||||||||||| ||||||||||||||||||    
T  28898862 ttaacttagttggtaaggacaatgcataatatat 28898895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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