View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17877_low_14 (Length: 268)
Name: NF17877_low_14
Description: NF17877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17877_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 21 - 268
Target Start/End: Original strand, 52262993 - 52263240
Alignment:
| Q |
21 |
cagaacccactttccgaaatatcgccgtcgccatctccgtcgtcagcgacggcgccagctctggtcctttcaaactcaggaaaacggatcgatcaagcag |
120 |
Q |
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| T |
52262993 |
cagaacccactttccgaaatatcaccgtcgccatctccgtcgtcagcgacggcgccagctctggtcctttcaaactcaggaaaacggatcgatcaagcag |
52263092 |
T |
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| Q |
121 |
ggaagaagaagtacgtaaagcaagtaacgggtcgtcacaacgatactgagcttcatctagcagctcaaagaggtgatgttggtgctgtgagacagatcct |
220 |
Q |
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| T |
52263093 |
ggaagaagaagtacgtaaagcaagtaacgggtcgtcacaacgatactgagcttcatctagcagctcaaagaggtgatgttggtgctgtgagacagatcct |
52263192 |
T |
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| Q |
221 |
tcttgatattgattctcaaataatgggtactttgagtggtgatgatga |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52263193 |
tcttgatattgattctcaaataatgggtactttgagtggtgatgatga |
52263240 |
T |
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