View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17877_low_16 (Length: 252)
Name: NF17877_low_16
Description: NF17877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17877_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 45536333 - 45536586
Alignment:
| Q |
1 |
aggtgtaattcagggtgcatgatgtggtctagacgaagaggtggttgttgagaaaaactggaggcaatgcaatcacataatgaa--taaagagtataaaa |
98 |
Q |
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| T |
45536333 |
aggtgcaattcagggtgcatgatgtggtctagacgaagaggtggttgttgagaaaaactggaggcaatgcaatcacataatgaatttacagagtatagaa |
45536432 |
T |
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| Q |
99 |
ctagacgtaattcatgctgttattaacccgtcatatctttagaattattgtgaagtagttatg------ttttacatacaaatatgtggttaattactgt |
192 |
Q |
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| T |
45536433 |
ctagatgtaattcatgctgctattaacccgtcatatctttagaattactgtgaagtagttatgttttttttttacatacaaatatgtggttaattactgt |
45536532 |
T |
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| Q |
193 |
aagcacattagaaaaagcgatcagacttgcacgggagtgtatgaagaattatct |
246 |
Q |
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| T |
45536533 |
aagcgcattagaaaaagtgatcagacttgcacgggagtttatgaagaattatct |
45536586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 44337420 - 44337315
Alignment:
| Q |
106 |
taattcatgctgttattaacccgtcatatctttagaattattgtgaagtagttatgttttacatacaaatatgtggttaattactgtaagcacattagaa |
205 |
Q |
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| T |
44337420 |
taattcatgctactattaactgttcatatctttacaattattgtgaagtagttatgcattataaacaaatatgtggttaattattgtatgcgcaatagaa |
44337321 |
T |
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| Q |
206 |
aaagcg |
211 |
Q |
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| T |
44337320 |
aaagcg |
44337315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 24563498 - 24563341
Alignment:
| Q |
1 |
aggtgtaattcagggtgcatgatgtggtctagacgaagaggtggttgttgagaaaaactggaggcaatgcaatcacataatgaa--taaagagtataaaa |
98 |
Q |
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||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| |
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| T |
24563498 |
aggtgtaattcagggtgcacgatgtggactagaggaagaggtggttgttgagaaaaactggaggcaatgcaatcacacaatgaatttacagagtataaaa |
24563399 |
T |
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| Q |
99 |
ctagacgtaattcatgctgttattaacccgtcatatctttagaattattgtgaagtag |
156 |
Q |
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| T |
24563398 |
ctagacgtgattcatgctgctattaactgctcatgtatttagaattattgtgaagtag |
24563341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 42920014 - 42919932
Alignment:
| Q |
129 |
tcatatctttagaattattgtgaagtagttatgttttacatacaaatatgtggttaattactgtaagcacattagaaaaagcg |
211 |
Q |
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| T |
42920014 |
tcatatctttataatttttgtgaagtagttatgtattaagtacaaatatgtggttaattactataagcgcagtagaaaaagcg |
42919932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 42920483 - 42920425
Alignment:
| Q |
129 |
tcatatctttagaattattgtgaagtagttatgttttacatacaaatatgtggttaatt |
187 |
Q |
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||||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
42920483 |
tcatatctttataatttttgtgaagtagttatgtattacgtacaaatatgtggttaatt |
42920425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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