View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17877_low_18 (Length: 222)

Name: NF17877_low_18
Description: NF17877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17877_low_18
NF17877_low_18
[»] chr2 (24 HSPs)
chr2 (13-208)||(2234817-2235013)
chr2 (67-127)||(28261266-28261327)
chr2 (64-126)||(7472745-7472808)
chr2 (64-119)||(39141541-39141597)
chr2 (64-126)||(2213479-2213542)
chr2 (69-127)||(8170285-8170344)
chr2 (67-125)||(14821137-14821196)
chr2 (64-126)||(23358231-23358294)
chr2 (64-126)||(28127359-28127422)
chr2 (64-125)||(5916313-5916375)
chr2 (64-125)||(9988573-9988635)
chr2 (64-125)||(31562756-31562818)
chr2 (64-125)||(36312251-36312313)
chr2 (64-119)||(16467066-16467122)
chr2 (64-118)||(1945111-1945166)
chr2 (65-127)||(42516048-42516111)
chr2 (64-126)||(44619133-44619196)
chr2 (64-113)||(3853886-3853936)
chr2 (64-125)||(28641616-28641678)
chr2 (67-119)||(25940316-25940369)
chr2 (64-124)||(32501961-32502022)
chr2 (64-119)||(3602531-3602587)
chr2 (62-113)||(25747951-25748003)
chr2 (64-111)||(42089604-42089652)
[»] chr6 (13 HSPs)
chr6 (64-126)||(13739170-13739233)
chr6 (64-126)||(13744670-13744733)
chr6 (64-123)||(10826058-10826118)
chr6 (64-127)||(29409325-29409389)
chr6 (63-125)||(6208135-6208198)
chr6 (64-125)||(21455847-21455909)
chr6 (64-119)||(31132435-31132491)
chr6 (64-123)||(7215542-7215602)
chr6 (64-125)||(16548104-16548166)
chr6 (85-125)||(17830094-17830134)
chr6 (64-125)||(16442424-16442486)
chr6 (85-127)||(27825577-27825619)
chr6 (64-125)||(33899079-33899141)
[»] chr5 (24 HSPs)
chr5 (66-125)||(3060296-3060355)
chr5 (64-126)||(32454515-32454578)
chr5 (67-119)||(2430370-2430423)
chr5 (64-119)||(13253153-13253209)
chr5 (64-126)||(3667832-3667895)
chr5 (67-125)||(33953975-33954034)
chr5 (64-126)||(41740664-41740727)
chr5 (64-127)||(22482166-22482230)
chr5 (64-122)||(7386003-7386062)
chr5 (64-126)||(35760167-35760230)
chr5 (64-104)||(28869574-28869615)
chr5 (64-122)||(39988038-39988097)
chr5 (67-125)||(41834871-41834930)
chr5 (84-126)||(3747682-3747724)
chr5 (70-119)||(7714925-7714975)
chr5 (65-119)||(32030701-32030754)
chr5 (64-121)||(34107018-34107076)
chr5 (88-125)||(4292128-4292165)
chr5 (67-119)||(10058059-10058112)
chr5 (64-127)||(27021105-27021170)
chr5 (64-119)||(40885195-40885252)
chr5 (62-113)||(7178769-7178821)
chr5 (64-127)||(40791140-40791204)
chr5 (64-127)||(42146285-42146349)
[»] chr4 (34 HSPs)
chr4 (64-126)||(43781592-43781655)
chr4 (64-125)||(4954125-4954187)
chr4 (67-125)||(48550504-48550563)
chr4 (63-127)||(51922888-51922953)
chr4 (67-124)||(28986972-28987030)
chr4 (64-125)||(39636735-39636797)
chr4 (64-119)||(14564220-14564276)
chr4 (64-127)||(42944972-42945036)
chr4 (67-125)||(14072453-14072512)
chr4 (64-126)||(29149381-29149444)
chr4 (66-127)||(9889410-9889472)
chr4 (66-127)||(9893659-9893721)
chr4 (63-127)||(26651921-26651986)
chr4 (67-125)||(32238135-32238194)
chr4 (64-126)||(49136471-49136534)
chr4 (67-125)||(54152995-54153054)
chr4 (64-125)||(16566255-16566317)
chr4 (85-127)||(20191781-20191823)
chr4 (64-125)||(30887227-30887289)
chr4 (64-125)||(31520444-31520506)
chr4 (66-126)||(30842081-30842142)
chr4 (66-126)||(48407773-48407834)
chr4 (63-126)||(19592304-19592368)
chr4 (84-119)||(5025485-5025520)
chr4 (64-118)||(6138694-6138749)
chr4 (67-121)||(43772200-43772255)
chr4 (59-124)||(15603311-15603377)
chr4 (85-127)||(39733395-39733437)
chr4 (64-125)||(46830143-46830205)
chr4 (64-124)||(13167476-13167537)
chr4 (64-119)||(2175221-2175277)
chr4 (64-127)||(26426188-26426252)
chr4 (64-119)||(48908231-48908287)
chr4 (64-119)||(55638861-55638917)
[»] chr3 (33 HSPs)
chr3 (67-127)||(31618964-31619025)
chr3 (64-125)||(10853341-10853403)
chr3 (65-125)||(20813111-20813172)
chr3 (64-124)||(53074869-53074930)
chr3 (64-125)||(52966883-52966945)
chr3 (66-126)||(38125517-38125578)
chr3 (67-127)||(48189518-48189579)
chr3 (67-125)||(16246171-16246230)
chr3 (67-125)||(35425299-35425358)
chr3 (67-125)||(38172384-38172443)
chr3 (67-125)||(44939491-44939550)
chr3 (67-119)||(8424806-8424859)
chr3 (63-119)||(10334109-10334166)
chr3 (63-127)||(23496287-23496352)
chr3 (66-126)||(42318294-42318355)
chr3 (64-126)||(26519628-26519691)
chr3 (64-122)||(30810019-30810078)
chr3 (67-125)||(30811608-30811667)
chr3 (84-127)||(37698484-37698527)
chr3 (64-125)||(22736946-22737008)
chr3 (64-125)||(44224727-44224789)
chr3 (67-125)||(50664724-50664782)
chr3 (64-126)||(53179813-53179875)
chr3 (64-124)||(15511449-15511510)
chr3 (64-119)||(45423842-45423898)
chr3 (64-125)||(3348208-3348270)
chr3 (64-125)||(25847998-25848059)
chr3 (85-127)||(28884257-28884299)
chr3 (87-125)||(38340771-38340809)
chr3 (67-119)||(23207145-23207196)
chr3 (64-119)||(31084179-31084235)
chr3 (64-119)||(32357482-32357538)
chr3 (85-113)||(55087598-55087626)
[»] chr8 (29 HSPs)
chr8 (64-126)||(44926813-44926876)
chr8 (63-123)||(41981132-41981193)
chr8 (64-119)||(3097280-3097336)
chr8 (64-119)||(25698033-25698089)
chr8 (64-119)||(27649725-27649781)
chr8 (63-126)||(33627107-33627171)
chr8 (66-127)||(3619144-3619206)
chr8 (64-124)||(8124945-8125006)
chr8 (64-123)||(3467508-3467568)
chr8 (64-126)||(29023211-29023274)
chr8 (64-125)||(6399182-6399244)
chr8 (63-124)||(41289131-41289193)
chr8 (67-119)||(28425549-28425602)
chr8 (64-119)||(36114114-36114170)
chr8 (67-125)||(40742370-40742429)
chr8 (64-126)||(42148977-42149040)
chr8 (85-127)||(24297687-24297729)
chr8 (64-125)||(43550864-43550926)
chr8 (64-112)||(24897661-24897710)
chr8 (64-127)||(440263-440327)
chr8 (64-126)||(4941855-4941918)
chr8 (64-125)||(16915034-16915096)
chr8 (86-124)||(26243065-26243103)
chr8 (89-127)||(37458403-37458441)
chr8 (65-124)||(31246390-31246450)
chr8 (64-119)||(34342927-34342982)
chr8 (89-125)||(36121633-36121669)
chr8 (64-119)||(38152248-38152304)
chr8 (64-111)||(42143438-42143486)
[»] chr7 (26 HSPs)
chr7 (64-125)||(37639416-37639478)
chr7 (64-125)||(32205913-32205973)
chr7 (64-119)||(34010332-34010388)
chr7 (64-126)||(9456090-9456153)
chr7 (64-119)||(19095929-19095984)
chr7 (64-125)||(43738000-43738062)
chr7 (65-127)||(386543-386606)
chr7 (68-126)||(47301622-47301681)
chr7 (64-125)||(3622521-3622583)
chr7 (64-125)||(12632144-12632206)
chr7 (64-125)||(38230054-38230116)
chr7 (64-125)||(48134566-48134628)
chr7 (67-119)||(3342782-3342835)
chr7 (67-119)||(44967463-44967516)
chr7 (64-119)||(34366042-34366098)
chr7 (64-119)||(37562562-37562618)
chr7 (86-123)||(37886854-37886891)
chr7 (67-119)||(39391201-39391254)
chr7 (85-121)||(3750676-3750712)
chr7 (65-127)||(46541584-46541647)
chr7 (64-125)||(3375476-3375538)
chr7 (67-124)||(10372022-10372080)
chr7 (64-121)||(42740382-42740440)
chr7 (64-124)||(42904540-42904601)
chr7 (64-127)||(43631756-43631820)
chr7 (64-119)||(47217602-47217658)
[»] chr1 (31 HSPs)
chr1 (64-125)||(4369877-4369939)
chr1 (64-119)||(43728952-43729008)
chr1 (67-125)||(6464597-6464656)
chr1 (67-125)||(45710038-45710097)
chr1 (64-125)||(7826429-7826491)
chr1 (64-124)||(6166100-6166161)
chr1 (67-127)||(10470577-10470638)
chr1 (64-119)||(35536067-35536123)
chr1 (67-125)||(31223363-31223422)
chr1 (64-126)||(12468201-12468263)
chr1 (64-125)||(11051386-11051447)
chr1 (64-119)||(5410635-5410691)
chr1 (64-127)||(35569277-35569341)
chr1 (64-125)||(36205180-36205242)
chr1 (64-125)||(42850294-42850356)
chr1 (64-124)||(13055988-13056049)
chr1 (67-119)||(25230002-25230055)
chr1 (64-119)||(12247415-12247471)
chr1 (64-127)||(20800352-20800416)
chr1 (64-122)||(25061218-25061277)
chr1 (69-119)||(40229550-40229601)
chr1 (59-121)||(48510901-48510964)
chr1 (85-119)||(1199822-1199856)
chr1 (64-113)||(9447534-9447584)
chr1 (85-119)||(13931618-13931652)
chr1 (65-114)||(34718451-34718501)
chr1 (64-124)||(11023404-11023465)
chr1 (65-124)||(15884216-15884276)
chr1 (70-125)||(31933716-31933772)
chr1 (87-127)||(46581283-46581323)
chr1 (64-127)||(50406117-50406181)
[»] scaffold0005 (1 HSPs)
scaffold0005 (64-119)||(253099-253155)
[»] scaffold0369 (1 HSPs)
scaffold0369 (64-126)||(8413-8476)
[»] scaffold0381 (1 HSPs)
scaffold0381 (66-127)||(9074-9136)
[»] scaffold0007 (1 HSPs)
scaffold0007 (67-125)||(29199-29258)
[»] scaffold0184 (1 HSPs)
scaffold0184 (85-127)||(9254-9296)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 2235013 - 2234817
Alignment:
Q  13 gcagagagaaattatttttatagaattgagtttgatgtgaattgatttgcctaaaagtgattcttatgagttatgttgtttggatagtttgaatcaaaat 112  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2235013 gcagagagaatttatttttatagaattgagtttgatgtgaattgatttacctaaaagtgattcttatgagttatgttgtttggatagtttgaatcaaaat 2234914  T
Q  113 taattttaaatgtattccactcttataattttgggaaagttaatcctgacaataca-tttgatcccatgaaacaaacactcccttggtgtgtataat 208  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||    
T  2234913 taattttaaatgtattcgactcttataatcttggggaagttaatcctaacaatacattttgattccatgaaacaaacactcccttggtgtgtataat 2234817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 28261327 - 28261266
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  28261327 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattaattttaaatgtat 28261266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 7472745 - 7472808
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  7472745 taaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgta 7472808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 39141541 - 39141597
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  39141541 taaaaatgattcttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 39141597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 2213542 - 2213479
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||| |||| |||| || |||||||||||||||||||||||||| ||||||||||||    
T  2213542 taaaagtgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaaatgta 2213479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 8170344 - 8170285
Alignment:
Q  69 gtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||    
T  8170344 gtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaatgtat 8170285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 14821196 - 14821137
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||    
T  14821196 aagtgattcttatgagttgatgttgtttggatattttgaatcaaaattgattttgaatgt 14821137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 23358294 - 23358231
Alignment:
Q  64 taaaagtgattcttatgagtta-tgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  23358294 taaaagtgattgtgatgagttaatgttgtttggatagtttgaatcaaaattgattttgaatgta 23358231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 28127359 - 28127422
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||| |||| |||| || |||||||||||||||||||||||||| ||||||||||||    
T  28127359 taaaagtgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaaatgta 28127422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 5916313 - 5916375
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  5916313 taaaagtgattcatgtgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 5916375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 9988573 - 9988635
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||| |||||||| |||||||||||||||||||||| |||||| ||||| |||||    
T  9988573 taaaagtgattcatatgagttgatgttgtttggatagtttgaatgaaaattgattttgaatgt 9988635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 31562756 - 31562818
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||| |||||    
T  31562756 taaaagtgattcttatgagtttatattgtttggataatttgaatcaaaattgattttgaatgt 31562818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 36312313 - 36312251
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  36312313 taaaagtgattcatgtgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 36312251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 16467122 - 16467066
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||||||| ||| |||| |||||||||||||  |||||||||||||||    
T  16467122 taaaagtgattcttatgggttgatgtagtttggatagtttagatcaaaattaatttt 16467066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 1945111 - 1945166
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattt 118  Q
    |||||||||||| | || ||| ||||||||||||||||||||||||||||| ||||    
T  1945111 taaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattt 1945166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 42516048 - 42516111
Alignment:
Q  65 aaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||| ||||||||  ||||| |||||||||||||||||||||| |||||| ||||| |||||||    
T  42516048 aaaaatgattctttcgagttgatgttgtttggatagtttgaattaaaattgattttgaatgtat 42516111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 44619133 - 44619196
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||| |||||  ||||| ||||||    
T  44619133 taaaaatgattattatgagttgatgttgtttggatagtttgaattaaaatcgattttgaatgta 44619196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 3853936 - 3853886
Alignment:
Q  64 taaaagtgattcttatgagt-tatgttgtttggatagtttgaatcaaaatt 113  Q
    ||||| |||||||||| | | ||||||||||||||||||||||||||||||    
T  3853936 taaaattgattcttatcaatctatgttgtttggatagtttgaatcaaaatt 3853886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 28641678 - 28641616
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||| |||| |||| ||||||||||||||  |||||| |||||| |||||||||||    
T  28641678 taaaagtgattattataagttgatgttgtttggatatgttgaattaaaattgattttaaatgt 28641616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 25940316 - 25940369
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||| ||||||| | |||||||||||| |||||||||||||||| |||||    
T  25940316 aagtgattattatgagatgatgttgtttggacagtttgaatcaaaattgatttt 25940369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 32502022 - 32501961
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    ||||||| ||| ||| ||||| || |||||||| ||||||||||||||||| ||||||||||    
T  32502022 taaaagtaatttttacgagttgatattgtttgggtagtttgaatcaaaattgattttaaatg 32501961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 3602531 - 3602587
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||| |||| | || |||||||||||||||||||||| |||||| |||||    
T  3602531 taaaagtgatttttattaattcatgttgtttggatagtttgaattaaaattgatttt 3602587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 25747951 - 25748003
Alignment:
Q  62 cctaaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaatt 113  Q
    ||||||| |||||||||| | || ||||||||||| |||||||||||||||||    
T  25747951 cctaaaattgattcttatcaatttatgttgtttgggtagtttgaatcaaaatt 25748003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 42089604 - 42089652
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaa 111  Q
    ||||||||||||||||||||| ||||||||||||||  | |||||||||    
T  42089604 taaaagtgattcttatgagttgatgttgtttggataaatcgaatcaaaa 42089652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 13739233 - 13739170
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  13739233 taaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgta 13739170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 13744733 - 13744670
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  13744733 taaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgta 13744670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 10826118 - 10826058
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaat 123  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  10826118 taaaagtgattcttatgagttgattttgtttggatagtttgaatcaaaattaattttaaat 10826058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 29409325 - 29409389
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  29409325 taaaaatgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgtat 29409389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 6208135 - 6208198
Alignment:
Q  63 ctaaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||    
T  6208135 ctaaaagtgattcttatgagttgatgttgtttagatagtttgaatcaaaattaattttgaatgt 6208198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 21455909 - 21455847
Alignment:
Q  64 taaaagtgattcttatgagtta-tgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  21455909 taaaagtgattctcatgagttaatgttgtttgcatagtttgaatcaaaattaattttaaatgt 21455847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 31132491 - 31132435
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||    
T  31132491 taaaagtgattcttatgggttgatgttgtttggatagtttgaatcaaaattgatttt 31132435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 7215602 - 7215542
Alignment:
Q  64 taaaagtgattcttatgagtta-tgttgtttggatagtttgaatcaaaattaattttaaat 123  Q
    ||||||||||||| |||||||| ||||||||| |||  |||||||||||||||||||||||    
T  7215602 taaaagtgattctcatgagttaatgttgtttgcataaattgaatcaaaattaattttaaat 7215542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 16548166 - 16548104
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||| | || ||| ||||||||||||||||||||||||||||| ||||| |||||    
T  16548166 taaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 16548104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 17830094 - 17830134
Alignment:
Q  85 atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  17830094 atgttgtttggatagtttgaatcaaaattgattttgaatgt 17830134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 16442424 - 16442486
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||| |||||||| || ||||||||||| ||||||| |||||| ||||| |||||    
T  16442424 taaaagtgattcatatgagttgatattgtttggataatttgaatgaaaattgattttgaatgt 16442486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 27825619 - 27825577
Alignment:
Q  85 atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    ||||||||||||||||||  |||||||||| ||||||||||||    
T  27825619 atgttgtttggatagttttgatcaaaattacttttaaatgtat 27825577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 33899079 - 33899141
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||| ||  ||||||||| |||| |||||||||| ||||| |||||    
T  33899079 taaaagtgattcttatgagttaataatgtttggatggtttaaatcaaaattgattttgaatgt 33899141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 3060296 - 3060355
Alignment:
Q  66 aaagtgattcttatgagttatgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  3060296 aaagtgattcttatgagttatgttgtttggatagtttgaatcaaaattgattttgaatgt 3060355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 32454578 - 32454515
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  32454578 taaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgta 32454515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 2430370 - 2430423
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  2430370 aagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 2430423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 13253153 - 13253209
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||    
T  13253153 taaaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 13253209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 3667895 - 3667832
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||| |||| |||| || |||||||||||||||||||||||||| ||||||||||||    
T  3667895 taaaagtgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaaatgta 3667832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 33953975 - 33954034
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||||||||||| |||||    
T  33953975 aagtgattctgatgagttgatgttgttcggatagtttgaatcaaaattaattttgaatgt 33954034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 41740664 - 41740727
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||| ||||||||| |||||||||||||||||| |||||||||| ||||| ||||||    
T  41740664 taaaagtgattgttatgagttgatgttgtttggatagtttaaatcaaaattgattttgaatgta 41740727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 22482230 - 22482166
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||| | || ||| ||||||||||||||||||||||||||||| ||||| |||||||    
T  22482230 taaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgtat 22482166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 7386003 - 7386062
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaa 122  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||||||||||  |||||||    
T  7386003 taaaagtgattcttatgagttgatgttgtttggataatttaaatcaaaattgcttttaaa 7386062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 35760230 - 35760167
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||| ||||| |||| |||| || |||||||||||||||||||||||||| ||||||||||||    
T  35760230 taaaactgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaaatgta 35760167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 28869574 - 28869615
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttga 104  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  28869574 taaaagtgattcttatgagttgatgttgtttggatagtttga 28869615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 39988038 - 39988097
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaa 122  Q
    ||||||||||||||||||||| |||||||||||||  ||| ||||||||||  |||||||    
T  39988038 taaaagtgattcttatgagttgatgttgtttggatgatttaaatcaaaatttcttttaaa 39988097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 41834930 - 41834871
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||| || || |||||||||||||||||||||| |||||| ||||| |||||    
T  41834930 aagtgattcttacgaattgatgttgtttggatagtttgaatgaaaattgattttgaatgt 41834871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 3747682 - 3747724
Alignment:
Q  84 tatgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||||||||| |||||||||| |||||| |||||    
T  3747682 tatgttgtttggatagttttaatcaaaattgattttacatgta 3747724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 7714975 - 7714925
Alignment:
Q  70 tgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||| |||| |||||||||||||||||||||| |||||| |||||    
T  7714975 tgattcttataagttgatgttgtttggatagtttgaattaaaattgatttt 7714925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 32030754 - 32030701
Alignment:
Q  65 aaaagtgattcttatgagttatgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||||||  | |||||||||| |||||||||||||||||| |||||    
T  32030754 aaaagtgattcttatgt-tgatgttgtttgaatagtttgaatcaaaattgatttt 32030701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 34107018 - 34107076
Alignment:
Q  64 taaaagtgattcttatgagtta-tgttgtttggatagtttgaatcaaaattaattttaa 121  Q
    ||||||| |||||||||| ||| ||||||||| |||| |||||||||||||| ||||||    
T  34107018 taaaagtaattcttatgaattaatgttgtttgaataggttgaatcaaaattacttttaa 34107076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 4292165 - 4292128
Alignment:
Q  88 ttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  4292165 ttgtttggataatttgaatcaaaattaattttgaatgt 4292128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 10058112 - 10058059
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||||| || || |||||||||||||||||||||| |||||| |||||    
T  10058112 aagtgattcttacgaattgatgttgtttggatagtttgaatgaaaattgatttt 10058059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 27021170 - 27021105
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggata-gtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||||||  |||| |||||||||||||| | ||||||||||||| ||||| |||||||    
T  27021170 taaaagtgattcttagaagttgatgttgtttggataagattgaatcaaaattgattttgaatgtat 27021105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 40885252 - 40885195
Alignment:
Q  64 taaaagtga-ttcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||| || ||||||||| || |||||||||||||||||||||||||| |||||    
T  40885252 taaaagtgagtttttatgagttgatattgtttggatagtttgaatcaaaattgatttt 40885195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 7178821 - 7178769
Alignment:
Q  62 cctaaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaatt 113  Q
    ||||||| |||||||||| | || ||||||||||| |||||||||||||||||    
T  7178821 cctaaaattgattcttatcaatttatgttgtttgggtagtttgaatcaaaatt 7178769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 40791140 - 40791204
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||||| |||||| || |||||||||||  ||||||||||||| ||| | |||||||    
T  40791140 taaaagtgattcttttgagttgatattgtttggatacattgaatcaaaattgattgtgaatgtat 40791204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 42146349 - 42146285
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||||| |||||| || |||||||||||  ||||||||||||| ||| | |||||||    
T  42146349 taaaagtgattcttttgagttgatattgtttggatacattgaatcaaaattgattgtgaatgtat 42146285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 43781592 - 43781655
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  43781592 taaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgta 43781655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 4954125 - 4954187
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  4954125 taaaagtgattcttatgagttgatgttgtttggataggttgaatcaaaattaattttaaatgt 4954187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 48550504 - 48550563
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  48550504 aagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttaaatgt 48550563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 51922953 - 51922888
Alignment:
Q  63 ctaaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||    
T  51922953 ctaaaagtaattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgtat 51922888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 28987030 - 28986972
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  28987030 aagtgatttttatgagttgatgttgtttggatagtttgaatcaaaattgattttaaatg 28986972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 39636797 - 39636735
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||    
T  39636797 taaaagtgattcttacgagttgatgttgtttggatagtatgaatcaaaattgattttaaatgt 39636735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 14564220 - 14564276
Alignment:
Q  64 taaaagtgattcttatgagtta-tgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  14564220 taaaagtgattcttatgagttaatgttgtttggatagattgaatcaaaattgatttt 14564276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 42944972 - 42945036
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    ||||||||||||||||| ||| |||||||||||||||| || ||||||||| |||||||||||||    
T  42944972 taaaagtgattcttatgtgttgatgttgtttggatagtatgtatcaaaattgattttaaatgtat 42945036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 14072512 - 14072453
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  14072512 aagtgattctaatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 14072453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 29149381 - 29149444
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||| |||| |||| || |||||||||||||||||||||||||| ||||||||||||    
T  29149381 taaaagtgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaaatgta 29149444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 9889410 - 9889472
Alignment:
Q  66 aaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    ||||||||||||||||||  |||||||||||||||||||||| |||||| ||||| |||||||    
T  9889410 aaagtgattcttatgagtagatgttgtttggatagtttgaattaaaattgattttgaatgtat 9889472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 9893721 - 9893659
Alignment:
Q  66 aaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    ||||||||||||||||||| |||||||||||||||||| ||| |||||| ||||| |||||||    
T  9893721 aaagtgattcttatgagttgatgttgtttggatagtttaaattaaaattgattttgaatgtat 9893659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 26651921 - 26651986
Alignment:
Q  63 ctaaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||| ||||||||||||  ||||| ||||||||||||||||||||||| ||||| |||||||    
T  26651921 ctaaaagtaattcttatgagtcgatgttatttggatagtttgaatcaaaattgattttgaatgtat 26651986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 32238135 - 32238194
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||| | ||||| |||||    
T  32238135 aagtgattcatatgagttgatgttgtttggatagtttgaatcaaaactgattttgaatgt 32238194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 49136534 - 49136471
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||||||||||| |||||||||| ||| ||| |||||||||| ||||| ||||||    
T  49136534 taaaagtgattcttatgagttgatgttgtttgaataattttaatcaaaattgattttgaatgta 49136471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 54153054 - 54152995
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||||| ||||| |||||    
T  54153054 aagtgattctcatgagttgatgttgtttgaatagtttgaatcaaaattgattttgaatgt 54152995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 16566317 - 16566255
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||| | || ||| ||||||||||||||||||||||||||||| ||||| |||||    
T  16566317 taaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 16566255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 20191781 - 20191823
Alignment:
Q  85 atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    ||||||||||||||  |||||||||||||||||||||||||||    
T  20191781 atgttgtttggataacttgaatcaaaattaattttaaatgtat 20191823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 30887227 - 30887289
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||| ||| ||||||||| ||||| ||||||||| ||||| |||||    
T  30887227 taaaagtgattcttatgagttaatgatgtttggatggtttgtatcaaaattgattttgaatgt 30887289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 31520444 - 31520506
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||| ||||||||| ||||| ||||| |||||||||| |||||| |||||||||||    
T  31520444 taaaagtgatttttatgagttgatgttttttgggtagtttgaataaaaattgattttaaatgt 31520506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 30842142 - 30842081
Alignment:
Q  66 aaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||||||||| || |  ||||||||||||||||||||||| ||||| ||||||    
T  30842142 aaagtgattcttatgagttgatttcatttggatagtttgaatcaaaattgattttgaatgta 30842081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 48407773 - 48407834
Alignment:
Q  66 aaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||||||||| || |  ||||||||||||||||||||||| ||||| ||||||    
T  48407773 aaagtgattcttatgagttgatttcatttggatagtttgaatcaaaattgattttgaatgta 48407834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 19592304 - 19592368
Alignment:
Q  63 ctaaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    |||||||||||||||| || || | |||||||||||||||||||| |||||| ||||| ||||||    
T  19592304 ctaaaagtgattcttacgaattgacgttgtttggatagtttgaatgaaaattgattttgaatgta 19592368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 119
Target Start/End: Complemental strand, 5025520 - 5025485
Alignment:
Q  84 tatgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||||||||||||||||||||||| |||||    
T  5025520 tatgttgtttggatagtttgaatcaaaattgatttt 5025485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 6138694 - 6138749
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattt 118  Q
    ||||| |||||| |||||||| |||||||||||||||||||||| |||||| ||||    
T  6138694 taaaaatgattcatatgagttgatgttgtttggatagtttgaatgaaaattgattt 6138749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 43772200 - 43772255
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaa 121  Q
    |||||||||||| ||||| |||||||||||||| | |||||||||||| |||||||    
T  43772200 aagtgattcttacgagttgatgttgtttggataatatgaatcaaaattgattttaa 43772255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 15603377 - 15603311
Alignment:
Q  59 ttgcctaaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    |||| ||||| ||||||||||||||| |||||||||||||| ||| | |||||||| ||||| ||||    
T  15603377 ttgcttaaaaatgattcttatgagttgatgttgtttggataatttaagtcaaaattgattttgaatg 15603311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 39733437 - 39733395
Alignment:
Q  85 atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    ||||||||||||||||||  ||||||||||||||| |||||||    
T  39733437 atgttgtttggatagttttgatcaaaattaattttgaatgtat 39733395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 46830143 - 46830205
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||| ||||||||||||||| |||||||||||||| | |  ||||||||| |||||||||||    
T  46830143 taaaattgattcttatgagttgatgttgtttggatattctacatcaaaattgattttaaatgt 46830205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 13167537 - 13167476
Alignment:
Q  64 taaaagtgattcttatgagtta-tgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    |||||||||||||||||  ||| || ||||||||||| |||||||||||||  |||||||||    
T  13167537 taaaagtgattcttatgtattaatgatgtttggatagattgaatcaaaattgcttttaaatg 13167476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 2175221 - 2175277
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||| | ||| ||| |||||||||||||||||||||| |||||| |||||    
T  2175221 taaaagtgattttgatgggttgatgttgtttggatagtttgaattaaaattgatttt 2175277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 26426188 - 26426252
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||||| |||||| || |||||||||||  ||||||||||||| ||| | |||||||    
T  26426188 taaaagtgattcttttgagttgatattgtttggatacattgaatcaaaattgattgtgaatgtat 26426252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 48908287 - 48908231
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||| |||| ||| |||| ||||||||||||||| ||||||||||||| |||||    
T  48908287 taaaagtaattcatataagttgatgttgtttggatagcttgaatcaaaattgatttt 48908231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 55638861 - 55638917
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||| |||||||||||||| || ||||||||||| | |||||||||||| |||||    
T  55638861 taaaagggattcttatgagttgatattgtttggataatatgaatcaaaattgatttt 55638917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 31618964 - 31619025
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  31618964 aagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgtat 31619025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 10853341 - 10853403
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  10853341 taaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 10853403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 20813172 - 20813111
Alignment:
Q  65 aaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  20813172 aaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 20813111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 53074930 - 53074869
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  53074930 taaaagtgattcttatgagtggatgttgtttggatagtttgaatcaaaattgattttaaatg 53074869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 52966883 - 52966945
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||||||    
T  52966883 taaaagtgattcttatgagttgatgttgtttagataggttgaatcaaaattgattttaaatgt 52966945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 38125517 - 38125578
Alignment:
Q  66 aaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||||||||| || | |||||||||||||||||||||||||||||| ||||||    
T  38125517 aaagtgattcttatgagttgatttcgtttggatagtttgaatcaaaattaattttgaatgta 38125578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 48189518 - 48189579
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||    
T  48189518 aagtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaatgtat 48189579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 16246171 - 16246230
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  16246171 aagtgattcttaggagttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 16246230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 35425358 - 35425299
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||    
T  35425358 aagtgattcttatgagttgatattgtttggatagtttgaatcaaaattgattttgaatgt 35425299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 38172384 - 38172443
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||    
T  38172384 aagtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaatgt 38172443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 44939491 - 44939550
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||| |||||||||| ||||||| |||||||||||||||| |||||    
T  44939491 aagtgattcttatgagttgatgttgtttgaatagttttaatcaaaattaattttgaatgt 44939550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 8424806 - 8424859
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||| |||||    
T  8424806 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 8424859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 10334166 - 10334109
Alignment:
Q  63 ctaaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||    
T  10334166 ctaaaagtaattcttatgagttgacgttgtttggatagtttgaatcaaaattgatttt 10334109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 23496352 - 23496287
Alignment:
Q  63 ctaaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||||||  | ||| ||||||||||||||||||||||||||||| ||||| |||||||    
T  23496352 ctaaaagtgattcttgcgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgtat 23496287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 42318355 - 42318294
Alignment:
Q  66 aaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||||||||| || | |||||||||||||||||||||||| ||||| ||||||    
T  42318355 aaagtgattcttatgagttgatttcgtttggatagtttgaatcaaaattgattttgaatgta 42318294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 26519691 - 26519628
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||| |||| |||| || |||||||||||||||||| ||||||| ||||||||||||    
T  26519691 taaaagtgatttttattagttgatattgtttggatagtttgaaacaaaattgattttaaatgta 26519628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 30810019 - 30810078
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaa 122  Q
    |||||||||||||||| | || ||| |||||||||||||||||||||||||| |||||||    
T  30810019 taaaagtgattcttataaattgatgatgtttggatagtttgaatcaaaattacttttaaa 30810078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 30811608 - 30811667
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||| || || |||||||||||||||||||||||||| ||||| |||||    
T  30811608 aagtgattcttatgacttgatattgtttggatagtttgaatcaaaattgattttgaatgt 30811667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 37698484 - 37698527
Alignment:
Q  84 tatgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||||||||||||||||||||| |||||| ||||||    
T  37698484 tatgttgtttggatagtttgaatcaaaattgattttacatgtat 37698527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 22737008 - 22736946
Alignment:
Q  64 taaaagtgattcttatgagtta-tgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||| |||||||||| ||||||| |||| ||||||||||||||| ||||| |||||    
T  22737008 taaaagtgattattatgagttaatgttgttgggatggtttgaatcaaaattgattttgaatgt 22736946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 44224789 - 44224727
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||| |||||||||||||| ||| | |||||||| ||||| |||||    
T  44224789 taaaagtgattcttatgagttgatgttgtttggataattttagtcaaaattgattttgaatgt 44224727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 50664782 - 50664724
Alignment:
Q  67 aagtgattcttatgagttatgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||| |||||||||||||| |||||||| ||| |||||| ||||| |||||    
T  50664782 aagtgattcttaagagttatgttgtttagatagtttaaattaaaattgattttgaatgt 50664724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 53179875 - 53179813
Alignment:
Q  64 taaaagtgattcttatgagttatgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||| |||||||||   ||||||||||||||| |||||||||| ||||| ||||||    
T  53179875 taaaagtgatttttatgagttgatttgtttggatagtttaaatcaaaattgattttgaatgta 53179813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 15511449 - 15511510
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    ||||||||||| ||||||||| || ||||||||||||||||||| |||||| ||||| ||||    
T  15511449 taaaagtgatttttatgagttgatattgtttggatagtttgaataaaaattgattttgaatg 15511510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 45423842 - 45423898
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||||||||| | || ||||||||||||||| ||||||||||||| |||||    
T  45423842 taaaagtgattcttatcaattcatgttgtttggatagcttgaatcaaaattgatttt 45423898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 3348270 - 3348208
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||| ||||||||||||| |||||||||||||| |||  ||||||||| ||||| |||||    
T  3348270 taaaagtaattcttatgagttgatgttgtttggatattttatatcaaaattgattttgaatgt 3348208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 25848059 - 25847998
Alignment:
Q  64 taaaagtgattcttatgagtta-tgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||| |||||||||||||||  |||||||||||||||| |||| |||||| |||||||||||    
T  25848059 taaaaatgattcttatgagtttgtgttgtttggatagtt-gaataaaaattgattttaaatgt 25847998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 28884299 - 28884257
Alignment:
Q  85 atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||||||||| ||||||||||| |||| |||||||    
T  28884299 atgttgtttggatagttttaatcaaaattatttttgaatgtat 28884257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 38340809 - 38340771
Alignment:
Q  87 gttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  38340809 gttgtttggatagtttgaataaaaattgattttaaatgt 38340771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 23207145 - 23207196
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||||||||||    
T  23207145 aagtgatt-ttatgagttgatgttgtttg-atagtttgaatcaaaattaatttt 23207196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 31084235 - 31084179
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||||||||||| || || || |||||||||||||||||| |||| |||||    
T  31084235 taaaagtgattcttatgacttgatattatttggatagtttgaatcataattgatttt 31084179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 32357538 - 32357482
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||||||| ||| ||||||||||| || ||||||| |||||| |||||    
T  32357538 taaaagtgattcttatgtgttgatgttgtttgggtactttgaattaaaattgatttt 32357482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 113
Target Start/End: Original strand, 55087598 - 55087626
Alignment:
Q  85 atgttgtttggatagtttgaatcaaaatt 113  Q
    |||||||||||||||||||||||||||||    
T  55087598 atgttgtttggatagtttgaatcaaaatt 55087626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 44926876 - 44926813
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||    
T  44926876 taaaagtgattcttatgagttgatgttatttggatagtttgaatcaaaattaattttgaatgta 44926813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 41981193 - 41981132
Alignment:
Q  63 ctaaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaat 123  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||    
T  41981193 ctaaaagtgattcttatgagttgatgttgtttggatactttgaatcaaaattgattttaaat 41981132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 3097280 - 3097336
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  3097280 taaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 3097336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 25698033 - 25698089
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  25698033 taaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 25698089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 27649781 - 27649725
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  27649781 taaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 27649725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 33627107 - 33627171
Alignment:
Q  63 ctaaaagtgattcttatgagtta-tgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||||    
T  33627107 ctaaaagtgattcttatgagttaatgttgtttggatagtttgaatcaaaatcgattttgaatgta 33627171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 3619144 - 3619206
Alignment:
Q  66 aaagtgattcttatgagt-tatgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||||| | | |||||||||||||||||||||||||||||| |||||||||||||    
T  3619144 aaagtgattcttatcaatgtatgttgtttggatagtttgaatcaaaattgattttaaatgtat 3619206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 8125006 - 8124945
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    ||||||||||||||| ||||| | ||||||||||||||||||||||||||| ||||||||||    
T  8125006 taaaagtgattcttaggagttgaagttgtttggatagtttgaatcaaaattgattttaaatg 8124945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 3467568 - 3467508
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaat 123  Q
    |||||||||||||||||| || |||||| |||||||||||||||||||||| |||||||||    
T  3467568 taaaagtgattcttatgaattgatgttggttggatagtttgaatcaaaattgattttaaat 3467508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 29023274 - 29023211
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  29023274 taaaattgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgta 29023211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 6399182 - 6399244
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||||| |||||    
T  6399182 taaaagtgattcttatgagttgatgttgtttggataattttaatcaaaattgattttgaatgt 6399244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 41289131 - 41289193
Alignment:
Q  63 ctaaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||||| ||||    
T  41289131 ctaaaagtgattcttataggttgatgttgtttggatagtttgaatcaaaattgattttgaatg 41289193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 28425549 - 28425602
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||| |||||    
T  28425549 aagtgattcttatgagttgacgttgtttggatagtttgaatcaaaattgatttt 28425602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 36114114 - 36114170
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||    
T  36114114 taaaagtgattcttatgagttgatattgtttggataatttgaatcaaaattgatttt 36114170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 40742370 - 40742429
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||| ||| |||||||||| ||| |||||||||| |||||||||||    
T  40742370 aagtgattcttatgagttgatgatgtttggatattttaaatcaaaattgattttaaatgt 40742429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 42149040 - 42148977
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    |||||||||||| |||||||| ||||||||| |||| |||||||||||||| ||||| ||||||    
T  42149040 taaaagtgattcgtatgagttgatgttgtttagataatttgaatcaaaattgattttgaatgta 42148977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 24297687 - 24297729
Alignment:
Q  85 atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    ||||||||||||||||||||||||||||| |||||| ||||||    
T  24297687 atgttgtttggatagtttgaatcaaaattgattttacatgtat 24297729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 43550926 - 43550864
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||| || ||| |||||||||||||| |||||||||||||| ||||| |||||    
T  43550926 taaaagtgattcttgtgggttgatgttgtttggataatttgaatcaaaattgattttgaatgt 43550864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 24897661 - 24897710
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaat 112  Q
    ||||| ||||||||||||||| |||||||||||||| |||||||||||||    
T  24897661 taaaattgattcttatgagttgatgttgtttggataatttgaatcaaaat 24897710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 440263 - 440327
Alignment:
Q  64 taaaagtgattcttatgagttat-gttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    ||||| ||||||||||||||||  ||||||||||||| ||||||||||| | ||||| |||||||    
T  440263 taaaaatgattcttatgagttaacgttgtttggatagattgaatcaaaactgattttgaatgtat 440327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 4941855 - 4941918
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    |||||| |||||||||||||| |||||||||| ||| ||||||| |||||| ||||| ||||||    
T  4941855 taaaagcgattcttatgagttgatgttgtttgaataatttgaattaaaattgattttgaatgta 4941918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 16915096 - 16915034
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||| ||| ||||||| | ||||| ||||||||| ||||| |||||    
T  16915096 taaaagtgattcttatgagttaatgatgtttggttggtttgtatcaaaattgattttgaatgt 16915034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 26243103 - 26243065
Alignment:
Q  86 tgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  26243103 tgttgtttggatagtttgaatcaaaattgattttgaatg 26243065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 37458403 - 37458441
Alignment:
Q  89 tgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  37458403 tgtttggatagtttgaatcaaaattgattttgaatgtat 37458441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 31246390 - 31246450
Alignment:
Q  65 aaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    ||||||||||||||| | || ||||||||||||||  ||| ||||||||| ||||||||||    
T  31246390 aaaagtgattcttataaattcatgttgtttggataacttggatcaaaattgattttaaatg 31246450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 34342927 - 34342982
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||||||||| |||  |||||||||||||| |||||||||||||| |||||    
T  34342927 taaaagtgattcttat-agtggatgttgtttggataatttgaatcaaaattgatttt 34342982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 36121633 - 36121669
Alignment:
Q  89 tgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||| |||||||||||||||||||||||| |||||    
T  36121633 tgtttgaatagtttgaatcaaaattaattttgaatgt 36121669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 38152248 - 38152304
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||| ||||||||||||||| |||| ||||||||| ||| |||||||||| |||||    
T  38152248 taaaaatgattcttatgagttgatgtggtttggatactttaaatcaaaattgatttt 38152304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 42143438 - 42143486
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaa 111  Q
    ||||||||||||||||||||| | |||||||||||| |||||| |||||    
T  42143438 taaaagtgattcttatgagttgacgttgtttggataatttgaaacaaaa 42143486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 37639478 - 37639416
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||    
T  37639478 taaaagtgattcttgtgggttgatgttgtttggatagtttgaatcaaaattaattttaaatgt 37639416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 32205973 - 32205913
Alignment:
Q  64 taaaagtgattcttatgagttatgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  32205973 taaaagtgattcttatgagttatgttgttt-gatagtatgaatcaaaattgattttaaatgt 32205913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 34010388 - 34010332
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  34010388 taaaagtggttcttatgagttgatgttgtttggatagtttgaatcaaaattaatttt 34010332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 9456153 - 9456090
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||||    
T  9456153 taaaagtgattcttatgagttgatcttgtttggatagtttgaatcaaaattgattttgaatgta 9456090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 19095984 - 19095929
Alignment:
Q  64 taaaagtgattcttatgagttatgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  19095984 taaaaatgattcttatgagttatgttgtttggataatttgaatcaaaattgatttt 19095929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 43738000 - 43738062
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||    
T  43738000 taaaagtgattcttatgagtggatgttgtttggatagtttgaatcaaaattgattttgaatgt 43738062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 386543 - 386606
Alignment:
Q  65 aaaagtgattcttatgagttatgttgtttggatagtttgaatcaaaatt-aattttaaatgtat 127  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||||||| | ||||||||||||    
T  386543 aaaagtgattcttatgattgatgttgtttggatagattgaatcaaaattgatttttaaatgtat 386606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 47301622 - 47301681
Alignment:
Q  68 agtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  47301622 agtgattcttatgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgta 47301681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 3622521 - 3622583
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||| ||||| |||||||||||||||| | |||||||||| |||||||||||    
T  3622521 taaaagtgattcttacgagttgatgttgtttggatagtataaatcaaaattgattttaaatgt 3622583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 12632144 - 12632206
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||| |||||||||| || ||||||||||||||| ||||| |||||    
T  12632144 taaaagtgattcttatgagttgatgttgtttgaattgtttgaatcaaaattgattttgaatgt 12632206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 38230116 - 38230054
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||| | || ||| ||||||||||||||||||||||||||||| |||||||||||    
T  38230116 taaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttaaatgt 38230054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 48134628 - 48134566
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||| |||| |||| ||||||||||||||||||||||||||||| ||||| |||||    
T  48134628 taaaagtgatttttataagttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 48134566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 3342835 - 3342782
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||| |||||    
T  3342835 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 3342782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 44967463 - 44967516
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  44967463 aagtgattcttatgagttgatgttgtttggataatttgaatcaaaattgatttt 44967516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 34366042 - 34366098
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||    
T  34366042 taaaagtgatttttatgagttgatgttgtttggatagtttgaataaaaattgatttt 34366098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 37562618 - 37562562
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||    
T  37562618 taaaagtgattcatatgagttgatgttgtttggatagtttgaatgaaaattgatttt 37562562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 37886854 - 37886891
Alignment:
Q  86 tgttgtttggatagtttgaatcaaaattaattttaaat 123  Q
    |||||||||||||||||||||||||||| |||||||||    
T  37886854 tgttgtttggatagtttgaatcaaaattgattttaaat 37886891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 39391201 - 39391254
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||||| || |||||||||| |||||||||||||||||| |||||    
T  39391201 aagtgattcttatgaattgatgttgtttgaatagtttgaatcaaaattgatttt 39391254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 3750712 - 3750676
Alignment:
Q  85 atgttgtttggatagtttgaatcaaaattaattttaa 121  Q
    |||||||||||||||||| ||||||||||||||||||    
T  3750712 atgttgtttggatagtttaaatcaaaattaattttaa 3750676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 46541647 - 46541584
Alignment:
Q  65 aaaagtgattcttatgagttatgttgtttggatagtttgaatcaaaatt-aattttaaatgtat 127  Q
    ||||||||||||||||| | || |||||| ||||| ||||||||||||| | ||||||||||||    
T  46541647 aaaagtgattcttatgattgatattgttttgatagattgaatcaaaattgatttttaaatgtat 46541584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 3375538 - 3375476
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||  |||||||||||||  |||| ||||||||| ||||| |||||    
T  3375538 taaaagtgattcttatgagtcgatgttgtttggatgatttggatcaaaattgattttgaatgt 3375476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 10372022 - 10372080
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    ||||||||||| || ||| |||||||| |||||||||||||||||||| ||||| ||||    
T  10372022 aagtgattcttgtgggttgatgttgttcggatagtttgaatcaaaattgattttgaatg 10372080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 42740440 - 42740382
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaa 121  Q
    ||||||||||||||||| ||| || ||||||||||||| || ||||||||| |||||||    
T  42740440 taaaagtgattcttatgtgttgatattgtttggatagtatgtatcaaaattgattttaa 42740382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 42904601 - 42904540
Alignment:
Q  64 taaaagtgattcttatgagtta-tgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    |||||||||||||||||| ||| | ||||||| ||| ||| ||||||||||| |||||||||    
T  42904601 taaaagtgattcttatgaattaattttgtttgtatattttaaatcaaaattacttttaaatg 42904540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 43631756 - 43631820
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||||| |||||| || |||||||||||  ||||||||||||| ||| | |||||||    
T  43631756 taaaagtgattcttttgagttgatattgtttggatatattgaatcaaaattgattgtgaatgtat 43631820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 47217602 - 47217658
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||| | ||| ||| |||||||||||||||||||||| |||||| |||||    
T  47217602 taaaagtgattttgatgggttgatgttgtttggatagtttgaattaaaattgatttt 47217658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 4369877 - 4369939
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  4369877 taaaagtgattcttatgagttgatgttgtttggataggttgaatcaaaattgattttaaatgt 4369939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 43728952 - 43729008
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  43728952 taaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 43729008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 6464656 - 6464597
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  6464656 aagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 6464597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 45710097 - 45710038
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  45710097 aagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 45710038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 7826429 - 7826491
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||    
T  7826429 taaaagtgattcttatgaattgatgttgtttggataggttgaatcaaaattgattttaaatgt 7826491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 6166161 - 6166100
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  6166161 taaaagtgattcttaggagttgatgttgtttgggtagtttgaatcaaaattgattttaaatg 6166100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 10470638 - 10470577
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||    
T  10470638 aagtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaatgtat 10470577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 35536123 - 35536067
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  35536123 taaaagtgattcttatgagttgatgttgtttggataatttgaatcaaaattgatttt 35536067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 31223422 - 31223363
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||    
T  31223422 aagtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaatgt 31223363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 12468263 - 12468201
Alignment:
Q  64 taaaagtgattcttatgagttatgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||||||||| |||||||||   |||||||||||||||||||||||||| ||||| ||||||    
T  12468263 taaaagtgatttttatgagttgatttgtttggatagtttgaatcaaaattgattttgaatgta 12468201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 11051386 - 11051447
Alignment:
Q  64 taaaagtgattcttatgagttatgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||| || |||||| ||||||||||||||||||||||||||| |||||| ||||| |||||    
T  11051386 taaaaatggttcttaagagttatgttgtttggatagtttgaataaaaattgattttgaatgt 11051447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 5410691 - 5410635
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||||||||||| || |||||||||||||||||||||||| |||| |||||    
T  5410691 taaaagtgattcttatgacttgatgttgtttggatagtttgaatcataattgatttt 5410635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 35569277 - 35569341
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||| | || ||| ||||||||||||||||||||||||||||| ||||| |||||||    
T  35569277 taaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgtat 35569341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 36205242 - 36205180
Alignment:
Q  64 taaaagtgattcttatgagtta-tgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||| |||| | ||||| |||||||||||||||||||||| ||||| |||||    
T  36205242 taaaagtgattcttacgagtgaatgttgcttggatagtttgaatcaaaattgattttgaatgt 36205180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 42850294 - 42850356
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||||||||| |||||||||||||| |||  ||||||||| ||||| |||||    
T  42850294 taaaagtgattcttatgagttgatgttgtttggatattttacatcaaaattgattttgaatgt 42850356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 13056049 - 13055988
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    ||||||||||| ||||||||| || ||||||||||||||||||| |||||| ||||| ||||    
T  13056049 taaaagtgatttttatgagttgatattgtttggatagtttgaataaaaattgattttgaatg 13055988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 25230055 - 25230002
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||| |||| |||||||||||||||||||||| |||||| |||||    
T  25230055 aagtgattcttattagttgatgttgtttggatagtttgaatgaaaattgatttt 25230002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 12247471 - 12247415
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||| ||||||||| |||||||||||| | |||||||||||||| |||||    
T  12247471 taaaagtgatttttatgagttgatgttgtttggagaatttgaatcaaaattgatttt 12247415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 20800352 - 20800416
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||| | || ||| ||||||||||||||||||||||||| ||| ||||| |||||||    
T  20800352 taaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaatattgattttgaatgtat 20800416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 25061277 - 25061218
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaa 122  Q
    |||||||||||||||| | || ||| |||||||||| |||||||||||||| ||||||||    
T  25061277 taaaagtgattcttatcaattgatgatgtttggataatttgaatcaaaattgattttaaa 25061218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 40229550 - 40229601
Alignment:
Q  69 gtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||| |||||    
T  40229550 gtgattcttctgagttgatgttgtttggataatttgaatcaaaattgatttt 40229601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 48510964 - 48510901
Alignment:
Q  59 ttgcctaaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaa 121  Q
    |||| |||||||||||||||||| || |||||||||| ||||| || ||||||||| |||||||    
T  48510964 ttgcttaaaagtgattcttatgaattgatgttgtttgaatagtatgtatcaaaattgattttaa 48510901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 1199856 - 1199822
Alignment:
Q  85 atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||||||||||||||||||| |||||    
T  1199856 atgttgtttggatagtttgaatcaaaattgatttt 1199822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 9447584 - 9447534
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaatt 113  Q
    ||||||||||||||  ||||| |||||||||||||||||||||| ||||||    
T  9447584 taaaagtgattctttcgagttgatgttgtttggatagtttgaattaaaatt 9447534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 13931652 - 13931618
Alignment:
Q  85 atgttgtttggatagtttgaatcaaaattaatttt 119  Q
    ||||||||||||||||||||||||||||| |||||    
T  13931652 atgttgtttggatagtttgaatcaaaattgatttt 13931618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 34718501 - 34718451
Alignment:
Q  65 aaaagtgattcttatgagttat-gttgtttggatagtttgaatcaaaatta 114  Q
    ||||||||||||||||| |||| |||||||||||| ||||||| |||||||    
T  34718501 aaaagtgattcttatgaattatagttgtttggatactttgaattaaaatta 34718451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 11023404 - 11023465
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    ||||||| ||| ||| ||||| || |||||||| ||||||||||||||||| ||||||||||    
T  11023404 taaaagtaatttttacgagttgatattgtttgggtagtttgaatcaaaattgattttaaatg 11023465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 15884276 - 15884216
Alignment:
Q  65 aaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatg 124  Q
    |||||||||| |||| | || ||||||||||||||||||| ||||||||| ||||| ||||    
T  15884276 aaaagtgatttttataaattcatgttgtttggatagtttggatcaaaattgattttgaatg 15884216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 31933772 - 31933716
Alignment:
Q  70 tgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    ||||||||||||||| |||||||||||||| |||  ||||||||| ||||| |||||    
T  31933772 tgattcttatgagttgatgttgtttggatattttacatcaaaattgattttgaatgt 31933716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 46581283 - 46581323
Alignment:
Q  87 gttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    |||||||||||| ||||||||||||||| |||| |||||||    
T  46581283 gttgtttggataatttgaatcaaaattatttttgaatgtat 46581323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 50406181 - 50406117
Alignment:
Q  64 taaaagtgattcttatgagttat-gttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    ||||| |||||||||| |||| | ||||||||||||  |||||||||||||  ||||||||||||    
T  50406181 taaaaatgattcttataagttgttgttgtttggatacattgaatcaaaattgtttttaaatgtat 50406117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 253155 - 253099
Alignment:
Q  64 taaaagtgattcttatgagtta-tgttgtttggatagtttgaatcaaaattaatttt 119  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  253155 taaaagtgattcttatgagttaatgttgtttggatagattgaatcaaaattgatttt 253099  T

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Target: scaffold0369 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 8476 - 8413
Alignment:
Q  64 taaaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgta 126  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  8476 taaaaatgatttttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgta 8413  T

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Target: scaffold0381 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 9136 - 9074
Alignment:
Q  66 aaagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    ||||||||||||||||||  |||||||||||||||||||||| |||||| ||||| |||||||    
T  9136 aaagtgattcttatgagtagatgttgtttggatagtttgaattaaaattgattttgaatgtat 9074  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 29199 - 29258
Alignment:
Q  67 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 125  Q
    |||| |||||||||| || ||||||||||||||||||||||||||||| ||||| |||||    
T  29199 aagttattcttatgaattgatgttgtttggatagtttgaatcaaaattgattttgaatgt 29258  T

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Target: scaffold0184 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 9254 - 9296
Alignment:
Q  85 atgttgtttggatagtttgaatcaaaattaattttaaatgtat 127  Q
    ||||||||||||||||||  ||||||||| |||||||||||||    
T  9254 atgttgtttggatagttttgatcaaaattgattttaaatgtat 9296  T

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