View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17877_low_19 (Length: 216)
Name: NF17877_low_19
Description: NF17877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17877_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 44341788 - 44341602
Alignment:
| Q |
10 |
gaggatgggaacttgatgaatctgtagaagaagcagcttgcagagaatcccttgaagaagcaggagtcacaggattagttgaggtatatattaattggac |
109 |
Q |
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| T |
44341788 |
gaggatgggaacttgatgaatctgtagaagaagcagcttgcagagaatcccttgaagaagcaggagtcacaggattagttgagg----tattaattggac |
44341693 |
T |
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| Q |
110 |
acttcatataattatgaaaatatttgttttttcttcttcatctagtgaaactgaattataattaatttgatattcatatgacagtgtgaattg |
202 |
Q |
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| T |
44341692 |
acttcatataattatgaaaatatttgttttttcttcttcttctagtgaaactgaattat--ttaatttgatattcatatgacagtgtgaattg |
44341602 |
T |
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Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 11455830 - 11455927
Alignment:
| Q |
12 |
ggatgggaacttgatgaatctgtagaagaagcagcttgcagagaatcccttgaagaagcaggagtcacaggattagttgaggtatat-attaattgga |
108 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||| | |||||||||| |
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| T |
11455830 |
ggatgggaacttgatgaatctttagaagaagcagcttgcagagaatcccttgaagaagcaggagttataggaactgttgaggtatttaattaattgga |
11455927 |
T |
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