View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17877_low_2 (Length: 500)
Name: NF17877_low_2
Description: NF17877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17877_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Complemental strand, 2816741 - 2816272
Alignment:
| Q |
19 |
gttactttgcaggagaatgtgaaggtgttgatagaggagaagaatgaaaatgatactctggacactttgtagatatgcgggctggttcagaccatagtgt |
118 |
Q |
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| T |
2816741 |
gttactttgcaggagaatgtgaaggtgttgatagaggagaagaatgaaaatgatactctggacactttgtagatatgcgggctggttcggaccatagtgt |
2816642 |
T |
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| Q |
119 |
tggatggcataaaaaattatgatgatctatatggtattatgaaataaatttcccatgaaacatagccgatcaatatgtttcgagtcacacgtagaaaggg |
218 |
Q |
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| T |
2816641 |
cg-atggcataaaaaattatgatgatctatatggtattatgaaataaatttcccatgaaacatagccgatcaatctgtttcgagtcacacgtagaaaggg |
2816543 |
T |
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| Q |
219 |
gacattattatgactatgtattttgatttttcctaatttttctgatgaacgacgtatatcggtatttaaataccgtagcaattatgactcccatgactta |
318 |
Q |
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| T |
2816542 |
gacattattatgactatgtattttgatttttcccaatttttctgacgaacaacgtatatcggtatttaaataccgtagcaattatgactcccatgactta |
2816443 |
T |
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| Q |
319 |
tatgactttttatgactttgatgagaaaataaatatgtatgaatatcgaaattgtgtgtgttgaatgaatttaaatgtgtatattggaaccgaatatgta |
418 |
Q |
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| T |
2816442 |
gatgactttttatgactttgatgagaaaataaatatctatgaatatcgaaattgtgtgtgttgaatgaatttaaatgtgtatattggaaccgaatatgta |
2816343 |
T |
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| Q |
419 |
tgaatgttgatatttgagtcctctttgtaagctttcttcaacccgaatgtaattttaacttatttcatctc |
489 |
Q |
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| T |
2816342 |
tgaatgttgatatttgagtcctctttgtaagctttcttcaacccgaatataattttaacttatttcatctc |
2816272 |
T |
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