View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17877_low_3 (Length: 493)
Name: NF17877_low_3
Description: NF17877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17877_low_3 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Complemental strand, 9400424 - 9399963
Alignment:
| Q |
19 |
cactacgcaaaacaaatccttcaaatcaacgaacatgcctttaactgtcgtaatgaatcaactgcaattaaacgcctcacctatgaagcatctctagctt |
118 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9400424 |
cactacgcaaaacaaatccttcaaatcaacgaacacgcctttaattgtcgtaatgaatcaactgcaattaaacgcctcacctatgaagcatctctagctt |
9400325 |
T |
|
| Q |
119 |
ttgcgccctatggcgaatattggagatttattaaaaaacttagtatgaacgagcttttgggctctcgtagcattagtagcttccaacacttgcgtttaca |
218 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9400324 |
ttgcaccctatggcgaatattggagatttattaaaaaacttagtatgaatgagcttttgggctctcgtagcattagtagcttccaacacttgcgtttaca |
9400225 |
T |
|
| Q |
219 |
agagactcacaacctccttaagcttttcgctgataaagcgaaaaactacgaggccgtgaatgtgacacaagagttgctaaagttatcaaacaacgttatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
9400224 |
agagactcacaacctccttaagcttttcgctgataaagcgaaaaactacgaggctgtgaatgtgacacaagagttgctaaagttgtcaaacaacgtcatt |
9400125 |
T |
|
| Q |
319 |
tctaaaatgatgttgggggaagcagaagaggccagggatgttgtgcgtgatgtgaccgagattttcggagagtttaatgtgtcggattttatttggttgt |
418 |
Q |
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||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
9400124 |
tctaaaatgatgttgggggaagctgaggaggctagggatgttgtgcgagatgtgaccgagatttttggagagtttaatgtatcggattttatttggttgt |
9400025 |
T |
|
| Q |
419 |
ttaagaaacttgatttgcaagggtttgggaagaggatagaggatttgtttatgaggtttgat |
480 |
Q |
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| T |
9400024 |
ttaagaaacttgatttgcaagggtttgggaagaggatagaggatttgtttatgaggtttgat |
9399963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Complemental strand, 9382955 - 9382494
Alignment:
| Q |
19 |
cactacgcaaaacaaatccttcaaatcaacgaacatgcctttaactgtcgtaatgaatcaactgcaattaaacgcctcacctatgaagcatctctagctt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
9382955 |
cactacgcaaaacaaatccttcaaatcaacgaacatgcctttaattgtcgtaatgaatcaactgcaattaaacgcctcacctacgaagcatccctagctt |
9382856 |
T |
|
| Q |
119 |
ttgcgccctatggcgaatattggagatttattaaaaaacttagtatgaacgagcttttgggctctcgtagcattagtagcttccaacacttgcgtttaca |
218 |
Q |
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| T |
9382855 |
ttgcaccctatggcgaatattggagatttattaaaaaacttagtatgaacgaacttttgggctctcgtagcattagtagcttccaacacttgcgtttaca |
9382756 |
T |
|
| Q |
219 |
agagactcacaacctccttaagcttttcgctgataaagcgaaaaactacgaggccgtgaatgtgacacaagagttgctaaagttatcaaacaacgttatt |
318 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9382755 |
agagactcacaatctccttaagtttttcgctgataaagcgaaaaactacgaggctgtgaatgtgacacaagagttgctaaagttatcaaacaacgtcata |
9382656 |
T |
|
| Q |
319 |
tctaaaatgatgttgggggaagcagaagaggccagggatgttgtgcgtgatgtgaccgagattttcggagagtttaatgtgtcggattttatttggttgt |
418 |
Q |
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||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9382655 |
tctaaaatgatgttgggggaagctgaggaggctagggatgttgtgcgtgatgtgaccgagatttttggagagtttaatgtgtcggattttatttggttgt |
9382556 |
T |
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| Q |
419 |
ttaagaaacttgatttgcaagggtttgggaagaggatagaggatttgtttatgaggtttgat |
480 |
Q |
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| T |
9382555 |
ttaagaaacttgatttgcaagggtttgggaagaggatagaggatttgtttatgaggtttgat |
9382494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 313 - 468
Target Start/End: Original strand, 23243576 - 23243731
Alignment:
| Q |
313 |
gttatttctaaaatgatgttgggggaagcagaagaggccagggatgttgtgcgtgatgtgaccgagattttcggagagtttaatgtgtcggattttattt |
412 |
Q |
| |
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||||||||||| |||||||| |||||||| || || |||||||| ||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
23243576 |
gttatttctaagatgatgttaggggaagctgaggaagccagggaagttgtccgtggcgtgaccgagattttcggggagtttaatgtttcggattttattt |
23243675 |
T |
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| Q |
413 |
ggttgtttaagaaacttgatttgcaagggtttgggaagaggatagaggatttgttt |
468 |
Q |
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| T |
23243676 |
ggttgtttaagaaagttgacttccaagggtttgggaagaggatagaagacttgttt |
23243731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 23243345 - 23243449
Alignment:
| Q |
82 |
gcaattaaacgcctcacctatgaagcatctctagcttttgcgccctatggcgaatattggagatttattaaaaaacttagtatgaacgagcttttgggct |
181 |
Q |
| |
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||||| ||||| || || ||||| ||||||||||||| |||||||| || || |||||||| || |||||||||||||| ||||| || ||||| |||| |
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| T |
23243345 |
gcaatcaaacgtctaacttatgattcatctctagctttcgcgccctacggtgattattggaggttcattaaaaaacttagcatgaatgaacttttaggct |
23243444 |
T |
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| Q |
182 |
ctcgt |
186 |
Q |
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||||| |
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| T |
23243445 |
ctcgt |
23243449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 24419 - 24455
Alignment:
| Q |
389 |
agtttaatgtgtcggattttatttggttgtttaagaa |
425 |
Q |
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|||||||| ||||||||||||||||||| |||||||| |
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| T |
24419 |
agtttaatttgtcggattttatttggttttttaagaa |
24455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 24939974 - 24940010
Alignment:
| Q |
389 |
agtttaatgtgtcggattttatttggttgtttaagaa |
425 |
Q |
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|||||||||||||||||||||||||||| | |||||| |
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| T |
24939974 |
agtttaatgtgtcggattttatttggttttgtaagaa |
24940010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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